UHGV-1463847

Genome information

vOTU vOTU-019971

Genome length 34,646 bps

CDS count 59

Completeness 82.49% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-1463847
vOTU ID	vOTU-019971
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0236685
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.42
Jumbo phage	No

Genome content
Genome length	34,646 bps
GC content	52.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	94.01%
Average CDS length	557.14 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1463847_3	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-1463847_3	Structural annotation	PF07238	NA	NA
UHGV-1463847_4	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-1463847_4	Structural annotation	NF041249, COG4379	NA	NA
UHGV-1463847_5	PHROG	phrog_6616	tail protein	tail
UHGV-1463847_5	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-1463847_5	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-1463847_5	Structural annotation	PF16466, TIGR01603, COG3500	NA	NA
UHGV-1463847_6	PHROG	phrog_1194	NA	unknown function
UHGV-1463847_6	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1463847_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1463847_7	eggNOG-mapper	1415775.U729_2614	phage tail tape measure protein	NA
UHGV-1463847_7	COG	COG1511	NA	NA
UHGV-1463847_8	PHROG	phrog_706	NA	unknown function
UHGV-1463847_8	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-1463847_8	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1463847_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1463847_8	Structural annotation	PF06854	NA	NA
UHGV-1463847_9	PHROG	phrog_11299	NA	unknown function
UHGV-1463847_9	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1463847_9	Structural annotation	PF10666	NA	NA
UHGV-1463847_10	PHROG	phrog_3099	NA	unknown function
UHGV-1463847_10	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-1463847_10	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-1463847_11	PHROG	phrog_3266	tail completion	connector
UHGV-1463847_11	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1463847_11	Structural annotation	PF12691	NA	NA
UHGV-1463847_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1463847_12	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-1463847_12	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-1463847_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1463847_12	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1463847_13	PHROG	phrog_3366	NA	unknown function
UHGV-1463847_13	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1463847_13	Pfam	PF20536	NA	DUF6751
UHGV-1463847_13	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1463847_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1463847_14	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-1463847_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1463847_15	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-1463847_15	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1463847_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1463847_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1463847_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1463847_15	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1463847_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1463847_16	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-1463847_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1463847_18	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-1463847_18	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-1463847_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1463847_18	COG	COG2369	NA	NA
UHGV-1463847_18	Structural annotation	PF06152, PF15542	NA	NA
UHGV-1463847_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-1463847_19	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-1463847_19	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1463847_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1463847_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1463847_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1463847_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1463847_20	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1463847_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1463847_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1463847_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1463847_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1463847_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1463847_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1463847_22	KOfam	K22226	ahbC; Fe-coproporphyrin III synthase	NA
UHGV-1463847_22	PHROG	phrog_21308	radical SAM domain-containing protein	other
UHGV-1463847_22	UniRef90	UniRef90_A0A1Y4VGH5	Radical SAM core domain-containing protein	NA
UHGV-1463847_22	eggNOG-mapper	411459.RUMOBE_01047	Radical SAM superfamily	NA
UHGV-1463847_22	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1463847_22	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-1463847_22	Structural annotation	PF00834, MF_00660, NF012164, COG0535	NA	NA
UHGV-1463847_23	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-1463847_23	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-1463847_23	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-1463847_23	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-1463847_23	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-1463847_24	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-1463847_24	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-1463847_24	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-1463847_24	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-1463847_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1463847_25	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1463847_25	UniRef90	UniRef90_A0A417WD62	DNA methylase	NA
UHGV-1463847_25	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-1463847_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1463847_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1463847_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1463847_25	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-1463847_27	eggNOG-mapper	397290.C810_00391	NA	NA
UHGV-1463847_27	Structural annotation	PF02211	NA	NA
UHGV-1463847_29	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-1463847_29	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-1463847_29	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-1463847_30	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-1463847_30	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1463847_33	PHROG	phrog_3136	NA	unknown function
UHGV-1463847_33	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-1463847_33	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1463847_33	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1463847_33	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1463847_36	PHROG	phrog_22543	NA	unknown function
UHGV-1463847_36	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-1463847_39	PHROG	phrog_10714	NA	unknown function
UHGV-1463847_40	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1463847_40	UniRef90	UniRef90_A0A7X9EDJ7	AP2 domain-containing protein	NA
UHGV-1463847_40	eggNOG-mapper	927704.SELR_12480	NA	NA
UHGV-1463847_40	Structural annotation	PF17375	NA	NA
UHGV-1463847_41	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1463847_41	UniRef90	UniRef90_A0A7W1N8Z0	Holliday junction endonuclease	NA
UHGV-1463847_41	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1463847_41	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1463847_41	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-1463847_42	PHROG	phrog_4433	NA	unknown function
UHGV-1463847_42	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-1463847_42	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1463847_42	Structural annotation	NF007410	NA	NA
UHGV-1463847_43	PHROG	phrog_16304	NA	unknown function
UHGV-1463847_43	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-1463847_43	eggNOG-mapper	755731.Clo1100_1616	Phage replisome organizer	NA
UHGV-1463847_43	Pfam	PF19808	NA	DUF6291
UHGV-1463847_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1463847_43	Structural annotation	PF19808	NA	NA
UHGV-1463847_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1463847_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1463847_44	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-1463847_44	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-1463847_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1463847_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1463847_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1463847_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1463847_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1463847_45	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1463847_45	UniRef90	UniRef90_A0A898FSL1	HNH_5 domain-containing protein	NA
UHGV-1463847_45	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-1463847_45	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1463847_46	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1463847_46	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-1463847_46	Structural annotation	PF05772	NA	NA
UHGV-1463847_47	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1463847_47	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-1463847_47	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1463847_47	Pfam	PF06378	NA	DUF1071
UHGV-1463847_47	Structural annotation	PF06378, COG4712	NA	NA
UHGV-1463847_54	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-1463847_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1463847_54	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1463847_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1463847_55	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-1463847_55	eggNOG-mapper	1297617.JPJD01000059_gene2644	addiction module antidote protein HigA	NA
UHGV-1463847_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1463847_55	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1463847_55	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1463847_57	eggNOG-mapper	877415.JNJQ01000019_gene1779	NA	NA
UHGV-1463847_57	Structural annotation	PF09624, PF12690, NF038353, COG5633	NA	NA
UHGV-1463847_58	eggNOG-mapper	428127.EUBDOL_00130	sequence-specific DNA binding	NA
UHGV-1463847_58	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1463847_58	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-1463847_59	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1463847_59	PHROG	phrog_95	integrase	integration and excision
UHGV-1463847_59	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-1463847_59	eggNOG-mapper	1378168.N510_03180	resolvase	NA
UHGV-1463847_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1463847_59	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1463847_59	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1463847_59	Structural annotation	PF00239, NF041201, COG1961	NA	NA