UHGV-1464119

Genome information

Genome length 22,574 bps

CDS count 25

Completeness 59.22% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1464119
vOTU ID	vOTU-024712
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0165545
BioSample	SAMN00715154
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.81
Jumbo phage	No

Genome content
Genome length	22,574 bps
GC content	48.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	92.41%
Average CDS length	836.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1464119_3	PHROG	phrog_6183	minor tail protein	tail
UHGV-1464119_3	UniRef90	UniRef90_A0A1L7GTL5	BppU_N domain-containing protein	NA
UHGV-1464119_3	eggNOG-mapper	1423814.HMPREF0549_1801	NA	NA
UHGV-1464119_3	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1464119_3	Structural annotation	PF10651, TIGR03503	NA	NA
UHGV-1464119_4	PHROG	phrog_17955	esterase/lipase	other
UHGV-1464119_4	eggNOG-mapper	1423814.HMPREF0549_1800	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1464119_5	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1464119_5	UniRef90	UniRef90_UPI001C3A4515	Pyocin knob domain-containing protein	NA
UHGV-1464119_6	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1464119_6	PHROG	phrog_819	tail protein	tail
UHGV-1464119_6	eggNOG-mapper	1423814.HMPREF0549_1809	NA	NA
UHGV-1464119_6	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1464119_7	KOfam	K07273	acm; lysozyme	NA
UHGV-1464119_7	PHROG	phrog_291	endolysin	lysis
UHGV-1464119_7	UniRef90	UniRef90_D0DUM0	Glycosyl hydrolase family 25	NA
UHGV-1464119_7	eggNOG-mapper	1423814.HMPREF0549_1797	Glycosyl hydrolases family 25	NA
UHGV-1464119_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1464119_7	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1464119_8	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1464119_8	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-1464119_8	UniRef90	UniRef90_A0A1L7GTS2	NlpC/P60 domain-containing protein	NA
UHGV-1464119_8	eggNOG-mapper	762051.LKI_09735	Prophage endopeptidase tail	NA
UHGV-1464119_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1464119_8	COG	COG4926	Phage-related protein	NA
UHGV-1464119_8	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1464119_9	PHROG	phrog_30835	NA	unknown function
UHGV-1464119_9	UniRef90	UniRef90_A0A3C1I780	Phage tail family protein	NA
UHGV-1464119_9	eggNOG-mapper	438780.D2KRB8_9CAUD	Phage tail protein	NA
UHGV-1464119_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1464119_9	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1464119_10	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1464119_10	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-1464119_10	UniRef90	UniRef90_A0A317GH25	TMP_3 domain-containing protein	NA
UHGV-1464119_10	eggNOG-mapper	1158601.I585_00686	NlpC/P60 family	NA
UHGV-1464119_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1464119_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1464119_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1464119_10	Structural annotation	PF20155, TIGR01760, NF012014, COG3941, COG3953	NA	NA
UHGV-1464119_11	PHROG	phrog_706	NA	unknown function
UHGV-1464119_11	UniRef90	UniRef90_UPI001785BB45	Gp15 family bacteriophage protein	NA
UHGV-1464119_11	eggNOG-mapper	1158601.I585_00687	Bacteriophage Gp15 protein	NA
UHGV-1464119_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1464119_11	Structural annotation	PF06854	NA	NA
UHGV-1464119_12	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-1464119_12	eggNOG-mapper	1140001.I571_02117	NA	NA
UHGV-1464119_12	Structural annotation	PF10666	NA	NA
UHGV-1464119_13	PHROG	phrog_820	major tail protein	tail
UHGV-1464119_13	UniRef90	UniRef90_A0A1L7GTN0	Capsid protein	NA
UHGV-1464119_13	eggNOG-mapper	1140001.I571_02115	domain, Protein	NA
UHGV-1464119_13	COG	COG5492	NA	NA
UHGV-1464119_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1464119_14	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1464119_14	UniRef90	UniRef90_A0A848PC31	Minor capsid protein	NA
UHGV-1464119_14	eggNOG-mapper	52979.O03934_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-1464119_14	Structural annotation	PF12691	NA	NA
UHGV-1464119_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1464119_15	UniRef90	UniRef90_A0A855X5U6	Capsid protein	NA
UHGV-1464119_15	eggNOG-mapper	52979.O03933_9CAUD	Minor capsid protein	NA
UHGV-1464119_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1464119_15	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1464119_16	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1464119_16	UniRef90	UniRef90_A0A1L7GY61	Capsid protein	NA
UHGV-1464119_16	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-1464119_16	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1464119_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1464119_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1464119_17	eggNOG-mapper	1423767.BALU01000006_gene772	NA	NA
UHGV-1464119_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-1464119_18	UniRef90	UniRef90_A0A317GIP8	Capsid protein	NA
UHGV-1464119_18	eggNOG-mapper	768486.EHR_02620	NA	NA
UHGV-1464119_18	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1464119_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1464119_19	UniRef90	UniRef90_UPI00195B133F	phage scaffolding protein	NA
UHGV-1464119_19	eggNOG-mapper	1158614.I592_01120	Phage minor structural protein GP20	NA
UHGV-1464119_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1464119_19	Structural annotation	PF06810	NA	NA
UHGV-1464119_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1464119_20	UniRef90	UniRef90_A0A3C1I7B3	Capsid protein	NA
UHGV-1464119_20	eggNOG-mapper	1158601.I585_00699	Phage minor capsid protein 2	NA
UHGV-1464119_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1464119_20	Structural annotation	PF06152	NA	NA
UHGV-1464119_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-1464119_21	UniRef90	UniRef90_A0A3C1I732	Capsid protein	NA
UHGV-1464119_21	eggNOG-mapper	1399941.U3PCP8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1464119_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1464119_21	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1464119_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1464119_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1464119_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1464119_22	UniRef90	UniRef90_A0A099YBQ0	Terminase	NA
UHGV-1464119_22	eggNOG-mapper	12348.A4L7R3_BPLLH	Pfam:Terminase_3C	NA
UHGV-1464119_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1464119_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1464119_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1464119_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1464119_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1464119_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1464119_23	UniRef90	UniRef90_A0A099YD58	Terminase	NA
UHGV-1464119_23	eggNOG-mapper	438780.D2KRB6_9CAUD	Terminase small subunit	NA
UHGV-1464119_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1464119_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1464119_25	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1464119_25	UniRef90	UniRef90_UPI0013145DF6	NA	NA
UHGV-1464119_25	eggNOG-mapper	1423724.BAMM01000039_gene2165	NA	NA
UHGV-1464119_25	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1464119_25	Structural annotation	PF07374, TIGR01637	NA	NA