UHGV-1465204

Genome information

Genome length 20,608 bps

CDS count 28

Completeness 55.61% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-1465204
vOTU ID	vOTU-021195
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0150881
BioSample	SAMEA2338734
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.48
Jumbo phage	No

Genome content
Genome length	20,608 bps
GC content	50.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	93.71%
Average CDS length	692.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1465204_4	PHROG	phrog_11237	NA	unknown function
UHGV-1465204_4	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-1465204_5	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1465204_5	UniRef90	UniRef90_A0A3E4GMG2	HNH endonuclease	NA
UHGV-1465204_5	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-1465204_6	PHROG	phrog_8660	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1465204_6	UniRef90	UniRef90_UPI0013E96D68	HNH endonuclease	NA
UHGV-1465204_6	eggNOG-mapper	634956.Geoth_0783	HNH endonuclease	NA
UHGV-1465204_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1465204_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1465204_7	PHROG	phrog_1459	terminase small subunit	head and packaging
UHGV-1465204_8	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1465204_8	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-1465204_8	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-1465204_8	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1465204_8	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1465204_9	PHROG	phrog_104	portal protein	head and packaging
UHGV-1465204_9	UniRef90	UniRef90_UPI0009847372	phage portal protein	NA
UHGV-1465204_9	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1465204_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1465204_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1465204_10	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1465204_10	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-1465204_10	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-1465204_10	Pfam	PF21814	NA	DUF6883
UHGV-1465204_10	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-1465204_10	Structural annotation	PF21814	NA	NA
UHGV-1465204_12	PHROG	phrog_3675	NA	unknown function
UHGV-1465204_12	UniRef90	UniRef90_A0A1H9BUF5	YjcQ protein	NA
UHGV-1465204_12	eggNOG-mapper	665950.HMPREF1025_02533	YjcQ protein	NA
UHGV-1465204_12	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1465204_12	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1465204_13	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-1465204_13	UniRef90	UniRef90_UPI001C03A2F1	NA	NA
UHGV-1465204_13	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-1465204_13	Structural annotation	PF14265	NA	NA
UHGV-1465204_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-1465204_14	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-1465204_14	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-1465204_14	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1465204_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1465204_16	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1465204_16	Structural annotation	PF09355	NA	NA
UHGV-1465204_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-1465204_17	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-1465204_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1465204_18	PHROG	phrog_387	neck protein	connector
UHGV-1465204_18	eggNOG-mapper	663952.SDD27957_07245	NA	NA
UHGV-1465204_19	PHROG	phrog_123	tail terminator	connector
UHGV-1465204_19	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-1465204_19	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-1465204_19	Structural annotation	PF06141	NA	NA
UHGV-1465204_20	PHROG	phrog_117	major tail protein	tail
UHGV-1465204_20	UniRef90	UniRef90_A0A356C4M0	Phage tail protein	NA
UHGV-1465204_20	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-1465204_20	COG	COG5492	NA	NA
UHGV-1465204_20	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1465204_21	PHROG	phrog_1526	NA	unknown function
UHGV-1465204_21	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-1465204_22	PHROG	phrog_1633	NA	unknown function
UHGV-1465204_22	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-1465204_22	eggNOG-mapper	585203.SMSK564_1277	NA	NA
UHGV-1465204_22	Pfam	PF17318	NA	DUF5361
UHGV-1465204_22	Structural annotation	PF17318	NA	NA
UHGV-1465204_23	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1465204_23	UniRef90	UniRef90_A0A1C5Y9X6	Phage-related protein	NA
UHGV-1465204_23	eggNOG-mapper	482234.SCAZ3_03770	phage tail tape measure protein	NA
UHGV-1465204_23	COG	COG5412	Phage-related protein	NA
UHGV-1465204_23	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-1465204_24	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1465204_24	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-1465204_24	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1465204_24	COG	COG4722	Phage-related protein YomH	NA
UHGV-1465204_24	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1465204_25	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1465204_25	UniRef90	UniRef90_UPI000C7C59F9	phage tail protein	NA
UHGV-1465204_25	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1465204_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1465204_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1465204_25	COG	COG4926	Phage-related protein	NA
UHGV-1465204_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1465204_26	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-1465204_26	PHROG	phrog_6320	tail fiber protein	tail
UHGV-1465204_26	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1465204_27	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1465204_27	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1465204_27	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1465204_27	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1465204_28	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-1465204_28	PHROG	phrog_1	integrase	integration and excision
UHGV-1465204_28	UniRef90	UniRef90_A0A416L1N4	Integrase	NA
UHGV-1465204_28	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-1465204_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1465204_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1465204_28	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4974	NA	NA