UHGV-1465418

Genome information

Genome length 35,413 bps

CDS count 48

Completeness 74.79% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-1465418
vOTU ID	vOTU-035521
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0241399
BioSample	SAMN00036408
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.13
Jumbo phage	No

Genome content
Genome length	35,413 bps
GC content	30.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.62%
Average CDS length	685.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1465418_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1465418_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1465418_2	UniRef90	UniRef90_UPI00110642E5	ATP-binding protein	NA
UHGV-1465418_2	eggNOG-mapper	1235802.C823_05699	PFAM IstB-like ATP binding protein	NA
UHGV-1465418_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1465418_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1465418_2	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-1465418_3	UniRef90	UniRef90_A0A3R6U682	Ribbon-helix-helix protein, CopG family	NA
UHGV-1465418_3	eggNOG-mapper	1235798.C817_02113	NA	NA
UHGV-1465418_3	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-1465418_3	Structural annotation	PF19891, TIGR04563, COG4877	NA	NA
UHGV-1465418_4	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1465418_4	UniRef90	UniRef90_W1XZM1	Homing nuclease	NA
UHGV-1465418_4	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-1465418_4	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1465418_4	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1465418_4	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1465418_4	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1465418_4	Structural annotation	PF07453	NA	NA
UHGV-1465418_6	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1465418_6	UniRef90	UniRef90_A0A1C5YZ22	HTH_Tnp_Tc3_1 domain-containing protein	NA
UHGV-1465418_6	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-1465418_6	Pfam	PF11427	Tc3 transposase	HTH_Tnp_Tc3_1
UHGV-1465418_6	Structural annotation	PF02796, TIGR04381, COG2771	NA	NA
UHGV-1465418_7	PHROG	phrog_824	NA	unknown function
UHGV-1465418_7	UniRef90	UniRef90_A0A1C5YY75	VRR-NUC domain	NA
UHGV-1465418_7	eggNOG-mapper	1321782.HMPREF1986_00332	VRR-NUC domain	NA
UHGV-1465418_7	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1465418_7	Structural annotation	PF08774	NA	NA
UHGV-1465418_8	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1465418_8	UniRef90	UniRef90_A0A1Y4FBH4	MazG domain-containing protein	NA
UHGV-1465418_8	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-1465418_10	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-1465418_10	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-1465418_10	UniRef90	UniRef90_UPI00189F78A1	ParM/StbA family protein	NA
UHGV-1465418_10	eggNOG-mapper	1414720.CBYM010000001_gene721	StbA protein	NA
UHGV-1465418_10	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-1465418_10	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-1465418_10	Structural annotation	PF21522, PF17989, MF_02207, NF010498, COG1077	NA	NA
UHGV-1465418_14	eggNOG-mapper	536232.CLM_2537	NA	NA
UHGV-1465418_16	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1465418_16	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1465418_16	UniRef90	UniRef90_UPI0014852BBC	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1465418_16	eggNOG-mapper	768710.DesyoDRAFT_2483	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-1465418_16	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1465418_16	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1465418_16	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1465418_16	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1465418_16	Structural annotation	PF04542, PF13404, MF_00959, TIGR02835, COG1191	NA	NA
UHGV-1465418_17	PHROG	phrog_98	NA	unknown function
UHGV-1465418_17	UniRef90	UniRef90_UPI001898FB63	YopX family protein	NA
UHGV-1465418_17	eggNOG-mapper	545697.HMPREF0216_02825	YopX protein	NA
UHGV-1465418_17	Pfam	PF09643	YopX protein	YopX
UHGV-1465418_17	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1465418_18	PHROG	phrog_98	NA	unknown function
UHGV-1465418_18	UniRef90	UniRef90_A0A1C5YXI2	YopX protein	NA
UHGV-1465418_18	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-1465418_18	Pfam	PF09643	YopX protein	YopX
UHGV-1465418_18	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1465418_18	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1465418_20	PHROG	phrog_1558	NA	unknown function
UHGV-1465418_20	UniRef90	UniRef90_A0A174GQI9	Sigma-70 region 4 type 2	NA
UHGV-1465418_20	eggNOG-mapper	632245.CLP_2622	NA	NA
UHGV-1465418_20	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1465418_21	PHROG	phrog_9079	NA	unknown function
UHGV-1465418_21	eggNOG-mapper	180332.JTGN01000015_gene1109	NA	NA
UHGV-1465418_22	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1465418_22	UniRef90	UniRef90_UPI0005E1909C	phage terminase small subunit	NA
UHGV-1465418_22	eggNOG-mapper	1292035.H476_1020	DNA packaging	NA
UHGV-1465418_22	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1465418_22	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1465418_22	COG	COG5484	NA	NA
UHGV-1465418_22	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-1465418_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1465418_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1465418_23	UniRef90	UniRef90_UPI00036E983E	phage portal protein	NA
UHGV-1465418_23	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-1465418_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1465418_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1465418_23	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1465418_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-1465418_24	UniRef90	UniRef90_UPI00036E0D7F	phage portal protein	NA
UHGV-1465418_24	eggNOG-mapper	536233.CLO_0882	NA	NA
UHGV-1465418_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1465418_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1465418_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1465418_25	UniRef90	UniRef90_UPI000364DC3E	phage minor capsid protein	NA
UHGV-1465418_25	eggNOG-mapper	536233.CLO_0883	Phage minor capsid protein 2	NA
UHGV-1465418_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1465418_25	COG	COG2369	NA	NA
UHGV-1465418_25	Structural annotation	PF06152	NA	NA
UHGV-1465418_26	PHROG	phrog_774	NA	unknown function
UHGV-1465418_26	UniRef90	UniRef90_A0A423UE21	NA	NA
UHGV-1465418_26	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1465418_28	PHROG	phrog_1048	NA	unknown function
UHGV-1465418_28	UniRef90	UniRef90_UPI00096A68AD	NA	NA
UHGV-1465418_28	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-1465418_28	Pfam	PF11195	NA	DUF2829
UHGV-1465418_28	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1465418_29	PHROG	phrog_419	NA	unknown function
UHGV-1465418_29	UniRef90	UniRef90_A0A0A8WEQ1	Phage-related protein	NA
UHGV-1465418_29	eggNOG-mapper	1499683.CCFF01000005_gene67	NA	NA
UHGV-1465418_29	Structural annotation	PF14083	NA	NA
UHGV-1465418_30	PHROG	phrog_918	NA	unknown function
UHGV-1465418_30	UniRef90	UniRef90_UPI00096A904F	NA	NA
UHGV-1465418_30	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-1465418_30	Pfam	PF19791	NA	DUF6275
UHGV-1465418_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1465418_32	UniRef90	UniRef90_UPI0006C08B27	phage scaffolding protein	NA
UHGV-1465418_32	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-1465418_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1465418_32	Structural annotation	PF06810	NA	NA
UHGV-1465418_33	PHROG	phrog_422	major head protein	head and packaging
UHGV-1465418_33	UniRef90	UniRef90_UPI0011DE1BAA	capsid protein	NA
UHGV-1465418_33	eggNOG-mapper	545697.HMPREF0216_02849	NA	NA
UHGV-1465418_33	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1465418_34	PHROG	phrog_1378	NA	unknown function
UHGV-1465418_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1465418_35	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-1465418_36	PHROG	phrog_3366	NA	unknown function
UHGV-1465418_36	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-1465418_36	Pfam	PF20536	NA	DUF6751
UHGV-1465418_36	Structural annotation	PF20536	NA	NA
UHGV-1465418_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1465418_37	UniRef90	UniRef90_UPI001D02A15E	minor capsid protein	NA
UHGV-1465418_37	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-1465418_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1465418_37	Structural annotation	PF11114	NA	NA
UHGV-1465418_38	PHROG	phrog_3266	tail completion	connector
UHGV-1465418_38	UniRef90	UniRef90_UPI000542DA3F	chloramphenicol resistance protein	NA
UHGV-1465418_38	eggNOG-mapper	545697.HMPREF0216_02854	NA	NA
UHGV-1465418_38	Structural annotation	PF12691	NA	NA
UHGV-1465418_39	PHROG	phrog_3099	NA	unknown function
UHGV-1465418_39	eggNOG-mapper	1292035.H476_1009	NA	NA
UHGV-1465418_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1465418_40	PHROG	phrog_4450	NA	unknown function
UHGV-1465418_40	UniRef90	UniRef90_UPI001A8FEF87	AP endonuclease	NA
UHGV-1465418_40	eggNOG-mapper	573061.Clocel_0218	NA	NA
UHGV-1465418_40	Pfam	PF20378	NA	DUF6673
UHGV-1465418_40	Structural annotation	PF20378	NA	NA
UHGV-1465418_41	PHROG	phrog_706	NA	unknown function
UHGV-1465418_41	UniRef90	UniRef90_UPI00036C8F95	bacteriophage Gp15 family protein	NA
UHGV-1465418_41	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-1465418_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1465418_41	Structural annotation	PF06854	NA	NA
UHGV-1465418_43	PHROG	phrog_9696	tail length tape measure protein	tail
UHGV-1465418_43	UniRef90	UniRef90_W1Y862	Phage tail tape measure protein, TP901 family, core region protein	NA
UHGV-1465418_43	eggNOG-mapper	536233.CLO_0896	tail tape measure protein	NA
UHGV-1465418_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1465418_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1465418_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1465418_44	PHROG	phrog_19074	NA	unknown function
UHGV-1465418_44	UniRef90	UniRef90_UPI00035DF3AF	phage tail tape measure protein	NA
UHGV-1465418_44	eggNOG-mapper	1410624.JNKK01000017_gene1985	Phage-related minor tail protein	NA
UHGV-1465418_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1465418_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1465418_44	COG	COG5283	Phage-related tail protein	NA
UHGV-1465418_44	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1465418_45	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1465418_45	UniRef90	UniRef90_UPI001D164D56	phage tail family protein	NA
UHGV-1465418_45	eggNOG-mapper	1499684.CCNP01000020_gene2277	Phage tail protein	NA
UHGV-1465418_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1465418_45	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1465418_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1465418_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-1465418_45	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-1465418_46	PHROG	phrog_6253	minor tail protein	tail
UHGV-1465418_46	UniRef90	UniRef90_UPI001D1653FC	phage tail protein	NA
UHGV-1465418_46	eggNOG-mapper	1340434.AXVA01000005_gene4864	Prophage endopeptidase tail	NA
UHGV-1465418_46	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1465418_46	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1465418_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1465418_46	COG	COG4926	Phage-related protein	NA
UHGV-1465418_46	Structural annotation	PF14594, PF08239, PF05382, TIGR01665, NF041850, NF033742, COG4926, COG4991, COG0791	NA	NA
UHGV-1465418_47	eggNOG-mapper	240302.BN982_04120	Phage minor structural protein	NA
UHGV-1465418_47	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1465418_47	Structural annotation	PF13157, PF13229, NF033679	NA	NA