UHGV-1465645

Genome information

Genome length 35,572 bps

CDS count 54

Completeness 98.04% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-1465645
vOTU ID	vOTU-061375
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0242482
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.82
Jumbo phage	No

Genome content
Genome length	35,572 bps
GC content	58.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.78%
Average CDS length	600.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1465645_2	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-1465645_2	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-1465645_3	UniRef90	UniRef90_UPI001C96492F	excisionase family DNA-binding protein	NA
UHGV-1465645_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1465645_3	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1465645_3	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1465645_3	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-1465645_5	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1465645_5	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-1465645_5	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-1465645_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1465645_5	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1465645_5	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-1465645_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1465645_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1465645_6	UniRef90	UniRef90_UPI001BB47897	helix-turn-helix domain-containing protein	NA
UHGV-1465645_6	eggNOG-mapper	693746.OBV_27490	sequence-specific DNA binding	NA
UHGV-1465645_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1465645_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1465645_6	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1465645_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1465645_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1465645_8	UniRef90	UniRef90_UPI0015595971	helix-turn-helix domain-containing protein	NA
UHGV-1465645_8	eggNOG-mapper	1094508.Tsac_0848	Helix-turn-helix XRE-family like proteins	NA
UHGV-1465645_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1465645_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1465645_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1465645_9	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1465645_9	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-1465645_10	PHROG	phrog_3989	NA	unknown function
UHGV-1465645_10	UniRef90	UniRef90_UPI0003170388	BRCT domain-containing protein	NA
UHGV-1465645_10	eggNOG-mapper	1396418.BATQ01000120_gene3072	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-1465645_10	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1465645_10	Structural annotation	PF00533, NF004844	NA	NA
UHGV-1465645_11	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1465645_11	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1465645_11	UniRef90	UniRef90_A0A810Q7W6	HicB family protein	NA
UHGV-1465645_11	eggNOG-mapper	641112.ACOK01000116_gene2617	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1465645_11	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1465645_11	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1465645_11	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1465645_12	KOfam	K14059	int; integrase	NA
UHGV-1465645_12	PHROG	phrog_1	integrase	integration and excision
UHGV-1465645_12	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-1465645_12	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-1465645_12	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1465645_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1465645_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1465645_12	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1465645_13	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1465645_13	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1465645_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1465645_16	PHROG	phrog_22984	NA	unknown function
UHGV-1465645_17	Structural annotation	PF20477, NF033819	NA	NA
UHGV-1465645_18	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-1465645_18	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1465645_18	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1465645_19	PHROG	phrog_1129	holin	lysis
UHGV-1465645_19	UniRef90	UniRef90_A0A6A8VHY5	Enolase	NA
UHGV-1465645_19	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1465645_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1465645_19	Structural annotation	PF06946	NA	NA
UHGV-1465645_20	PHROG	phrog_1863	NA	unknown function
UHGV-1465645_20	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-1465645_21	PHROG	phrog_14030	NA	unknown function
UHGV-1465645_21	UniRef90	UniRef90_A0A173XSJ1	Autolytic lysozyme	NA
UHGV-1465645_21	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-1465645_21	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1465645_21	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1465645_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1465645_21	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-1465645_23	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1465645_23	Structural annotation	PF07210, TIGR03000	NA	NA
UHGV-1465645_24	PHROG	phrog_13589	NA	unknown function
UHGV-1465645_24	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1465645_25	PHROG	phrog_31538	NA	unknown function
UHGV-1465645_26	Structural annotation	PF10651, NF038186	NA	NA
UHGV-1465645_27	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-1465645_28	PHROG	phrog_26795	NA	unknown function
UHGV-1465645_28	eggNOG-mapper	796940.HMPREF9628_00133	NA	NA
UHGV-1465645_28	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1465645_29	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1465645_29	eggNOG-mapper	1161901.I1TLF2_9CAUD	NA	NA
UHGV-1465645_29	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1465645_30	PHROG	phrog_33680	NA	unknown function
UHGV-1465645_30	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-1465645_30	eggNOG-mapper	1408415.JHXL01000001_gene400	phage tail tape measure protein	NA
UHGV-1465645_30	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1465645_30	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1465645_31	Structural annotation	PF11836	NA	NA
UHGV-1465645_32	PHROG	phrog_88	major tail protein	tail
UHGV-1465645_32	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-1465645_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1465645_33	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-1465645_33	Structural annotation	TIGR01725	NA	NA
UHGV-1465645_34	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-1465645_34	Structural annotation	PF05657	NA	NA
UHGV-1465645_35	PHROG	phrog_25	head closure Hc1	connector
UHGV-1465645_35	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-1465645_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1465645_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1465645_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1465645_36	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1465645_36	UniRef90	UniRef90_A0A8J6JAY9	Phage gp6-like head-tail connector protein	NA
UHGV-1465645_36	eggNOG-mapper	1403313.AXBR01000002_gene4324	Phage gp6-like head-tail connector protein	NA
UHGV-1465645_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1465645_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1465645_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-1465645_37	UniRef90	UniRef90_UPI001BB4749F	phage major capsid protein	NA
UHGV-1465645_37	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1465645_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1465645_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1465645_37	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1465645_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1465645_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1465645_38	UniRef90	UniRef90_A0A644ZMQ3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1465645_38	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-1465645_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1465645_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1465645_38	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1465645_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-1465645_39	UniRef90	UniRef90_A0A3D4EI33	Phage portal protein	NA
UHGV-1465645_39	eggNOG-mapper	1120971.AUCA01000066_gene593	Phage portal protein	NA
UHGV-1465645_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1465645_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1465645_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1465645_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1465645_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1465645_41	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-1465645_41	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-1465645_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1465645_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1465645_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1465645_41	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1465645_42	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1465645_42	UniRef90	UniRef90_UPI000C77CC02	P27 family phage terminase small subunit	NA
UHGV-1465645_42	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1465645_42	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1465645_42	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1465645_43	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1465645_43	UniRef90	UniRef90_A0A3D4EH89	HNH endonuclease	NA
UHGV-1465645_43	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-1465645_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1465645_43	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1465645_44	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-1465645_44	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-1465645_44	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-1465645_44	Structural annotation	PF14205	NA	NA
UHGV-1465645_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1465645_45	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-1465645_45	Structural annotation	PF01446, NF041486	NA	NA
UHGV-1465645_46	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1465645_46	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1465645_46	UniRef90	UniRef90_UPI00055C7461	site-specific DNA-methyltransferase	NA
UHGV-1465645_46	eggNOG-mapper	1444310.JANV01000096_gene3256	DNA methylase	NA
UHGV-1465645_46	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1465645_46	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1465645_46	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-1465645_46	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1465645_48	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-1465645_48	Pfam	PF04448	NA	DUF551
UHGV-1465645_48	Structural annotation	NF041588	NA	NA
UHGV-1465645_50	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1465645_50	PHROG	phrog_27290	NA	unknown function
UHGV-1465645_50	UniRef90	UniRef90_G4L1G7	HTH cro/C1-type domain-containing protein	NA
UHGV-1465645_50	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-1465645_50	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1465645_50	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1465645_50	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1465645_51	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1465645_51	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1465645_51	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-1465645_51	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1465645_51	Pfam	PF13614	AAA domain	AAA_31
UHGV-1465645_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1465645_51	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1465645_52	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1465645_52	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1465645_52	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-1465645_52	eggNOG-mapper	500635.MITSMUL_04264	Participates in initiation and elongation during chromosome replication	NA
UHGV-1465645_52	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1465645_52	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1465645_52	COG	COG0305	Replicative DNA helicase	NA
UHGV-1465645_52	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1465645_53	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1465645_53	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-1465645_53	eggNOG-mapper	663278.Ethha_1883	NA	NA
UHGV-1465645_53	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1465645_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1465645_53	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA