UHGV-1466990

Genome information

Genome length 35,486 bps

CDS count 62

Completeness 78.40% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-1466990
vOTU ID	vOTU-028809
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0241887
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.73
Jumbo phage	No

Genome content
Genome length	35,486 bps
GC content	41.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.60%
Average CDS length	527.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1466990_1	eggNOG-mapper	397290.C810_01445	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1466990_1	COG	COG3617	Prophage antirepressor	NA
UHGV-1466990_2	UniRef90	UniRef90_A0A414UVS4	HTH cro/C1-type domain-containing protein	NA
UHGV-1466990_2	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-1466990_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1466990_4	eggNOG-mapper	62928.azo3783	NA	NA
UHGV-1466990_4	Structural annotation	PF20344, COG3975	NA	NA
UHGV-1466990_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1466990_7	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1466990_7	UniRef90	UniRef90_A0A2N5P5D9	AntA domain-containing protein	NA
UHGV-1466990_7	eggNOG-mapper	1408823.AXUS01000009_gene1978	AntA/AntB antirepressor	NA
UHGV-1466990_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1466990_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1466990_7	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-1466990_10	PHROG	phrog_36464	NA	unknown function
UHGV-1466990_10	eggNOG-mapper	411461.DORFOR_01136	NA	NA
UHGV-1466990_10	Structural annotation	PF09035	NA	NA
UHGV-1466990_14	PHROG	phrog_30234	NA	unknown function
UHGV-1466990_14	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-1466990_15	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1466990_15	UniRef90	UniRef90_UPI001F180A96	NA	NA
UHGV-1466990_15	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-1466990_15	Pfam	PF06378	NA	DUF1071
UHGV-1466990_15	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-1466990_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1466990_16	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-1466990_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1466990_17	PHROG	phrog_7566	NA	unknown function
UHGV-1466990_17	UniRef90	UniRef90_A0A2N5NVH0	Phosphoenolpyruvate carboxykinase	NA
UHGV-1466990_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1466990_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1466990_18	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1466990_18	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-1466990_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1466990_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1466990_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1466990_19	PHROG	phrog_1163	NA	unknown function
UHGV-1466990_19	UniRef90	UniRef90_A0A415S878	Replication protein	NA
UHGV-1466990_19	eggNOG-mapper	1042163.BRLA_c031420	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1466990_19	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1466990_19	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1466990_19	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1466990_19	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-1466990_19	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1466990_20	PHROG	phrog_2600	NA	unknown function
UHGV-1466990_20	eggNOG-mapper	1178540.BA70_18565	NA	NA
UHGV-1466990_22	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-1466990_23	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1466990_23	UniRef90	UniRef90_A0A2N5NVP1	HNHc domain-containing protein	NA
UHGV-1466990_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1466990_23	Structural annotation	PF13392	NA	NA
UHGV-1466990_24	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1466990_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1466990_24	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1466990_24	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1466990_24	Structural annotation	PF14354, TIGR03655, COG3811	NA	NA
UHGV-1466990_26	PHROG	phrog_8684	NA	unknown function
UHGV-1466990_26	UniRef90	UniRef90_F7K050	YopX domain-containing protein	NA
UHGV-1466990_26	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-1466990_26	Pfam	PF09643	YopX protein	YopX
UHGV-1466990_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1466990_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1466990_31	PHROG	phrog_15198	NA	unknown function
UHGV-1466990_31	UniRef90	UniRef90_UPI00046759AC	NA	NA
UHGV-1466990_31	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-1466990_31	Pfam	PF04448	NA	DUF551
UHGV-1466990_33	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-1466990_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1466990_36	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-1466990_36	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-1466990_36	Structural annotation	PF02996	NA	NA
UHGV-1466990_38	PHROG	phrog_2412	NA	unknown function
UHGV-1466990_38	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-1466990_38	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-1466990_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1466990_39	PHROG	phrog_10250	NA	unknown function
UHGV-1466990_39	UniRef90	UniRef90_UPI001CD3A8F7	PBSX family phage terminase large subunit	NA
UHGV-1466990_39	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-1466990_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1466990_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1466990_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-1466990_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1466990_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-1466990_40	UniRef90	UniRef90_UPI00156E2A2F	phage capsid protein	NA
UHGV-1466990_40	eggNOG-mapper	33035.JPJF01000030_gene2289	NA	NA
UHGV-1466990_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1466990_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1466990_41	UniRef90	UniRef90_UPI000E4FFED9	phage minor capsid protein	NA
UHGV-1466990_41	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-1466990_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1466990_41	COG	COG2369	NA	NA
UHGV-1466990_41	Structural annotation	PF06152	NA	NA
UHGV-1466990_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1466990_43	UniRef90	UniRef90_UPI000E47EB84	phage scaffolding protein	NA
UHGV-1466990_43	eggNOG-mapper	1235799.C818_04222	Phage minor structural protein GP20	NA
UHGV-1466990_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1466990_43	Structural annotation	PF06810	NA	NA
UHGV-1466990_44	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-1466990_44	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1466990_45	PHROG	phrog_10972	tail fiber protein	tail
UHGV-1466990_45	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-1466990_45	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-1466990_45	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-1466990_45	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1466990_46	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1466990_46	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-1466990_47	PHROG	phrog_3366	NA	unknown function
UHGV-1466990_47	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-1466990_47	Pfam	PF20536	NA	DUF6751
UHGV-1466990_47	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1466990_48	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1466990_48	UniRef90	UniRef90_UPI000E48DD75	minor capsid protein	NA
UHGV-1466990_48	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-1466990_48	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1466990_48	Structural annotation	PF11114	NA	NA
UHGV-1466990_49	PHROG	phrog_3266	tail completion	connector
UHGV-1466990_49	UniRef90	UniRef90_UPI001570657D	chloramphenicol resistance protein	NA
UHGV-1466990_49	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-1466990_49	Structural annotation	PF12691	NA	NA
UHGV-1466990_50	PHROG	phrog_3099	NA	unknown function
UHGV-1466990_50	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-1466990_50	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-1466990_50	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1466990_51	PHROG	phrog_4450	NA	unknown function
UHGV-1466990_51	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-1466990_51	Pfam	PF20378	NA	DUF6673
UHGV-1466990_51	Structural annotation	PF20378	NA	NA
UHGV-1466990_52	PHROG	phrog_706	NA	unknown function
UHGV-1466990_52	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-1466990_52	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-1466990_52	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1466990_52	Structural annotation	PF06854	NA	NA
UHGV-1466990_53	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1466990_53	UniRef90	UniRef90_A0A829NQN8	Bro-N domain-containing protein	NA
UHGV-1466990_53	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-1466990_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1466990_53	COG	COG3617	Prophage antirepressor	NA
UHGV-1466990_53	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-1466990_55	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1466990_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1466990_55	UniRef90	UniRef90_UPI00156E0ED4	helix-turn-helix domain-containing protein	NA
UHGV-1466990_55	eggNOG-mapper	500632.CLONEX_03573	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1466990_55	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1466990_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1466990_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1466990_56	UniRef90	UniRef90_UPI00156F727A	helix-turn-helix transcriptional regulator	NA
UHGV-1466990_56	eggNOG-mapper	537007.BLAHAN_06453	sequence-specific DNA binding	NA
UHGV-1466990_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1466990_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1466990_57	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1466990_57	UniRef90	UniRef90_R0CKD2	Bro-N domain-containing protein	NA
UHGV-1466990_57	eggNOG-mapper	262071.A3QSE3_9CAUD	DNA binding	NA
UHGV-1466990_57	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1466990_57	Structural annotation	PF02498, COG3617	NA	NA
UHGV-1466990_60	PHROG	phrog_5218	NA	unknown function
UHGV-1466990_60	UniRef90	UniRef90_UPI00156ED04E	phage tail tape measure protein	NA
UHGV-1466990_60	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-1466990_60	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1466990_60	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1466990_60	COG	COG4487	NA	NA
UHGV-1466990_60	Structural annotation	PF10145, TIGR01760, NF011901	NA	NA
UHGV-1466990_61	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1466990_61	UniRef90	UniRef90_UPI001186E767	phage tail family protein	NA
UHGV-1466990_61	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-1466990_61	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1466990_61	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1466990_61	COG	COG4722	Phage-related protein YomH	NA
UHGV-1466990_61	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1466990_62	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1466990_62	UniRef90	UniRef90_UPI00157B2984	phage tail protein	NA
UHGV-1466990_62	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-1466990_62	Structural annotation	PF21683, MF_01370, TIGR01600, COG3500	NA	NA