UHGV-1467076

Genome information

Genome length 21,341 bps

CDS count 32

Completeness 50.89% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-1467076
vOTU ID	vOTU-035554
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0156417
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.78
Jumbo phage	No

Genome content
Genome length	21,341 bps
GC content	51.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	90.24%
Average CDS length	606.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1467076_1	PHROG	phrog_191	CII-like transcriptional activator	transcription regulation
UHGV-1467076_1	UniRef90	UniRef90_P03043	Regulatory protein CII	NA
UHGV-1467076_1	eggNOG-mapper	1147147.K7P6Y2_9CAUD	Bacteriophage CII protein	NA
UHGV-1467076_1	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-1467076_1	Structural annotation	PF05269	NA	NA
UHGV-1467076_2	PHROG	phrog_2519	NA	unknown function
UHGV-1467076_3	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1467076_3	UniRef90	UniRef90_B7LUB6	Phage_rep_O domain-containing protein	NA
UHGV-1467076_3	eggNOG-mapper	754331.AEME01000001_gene3595	Bacteriophage replication protein O	NA
UHGV-1467076_3	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-1467076_3	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-1467076_4	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1467076_4	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1467076_4	UniRef90	UniRef90_A0A2V2J552	DNA helicase	NA
UHGV-1467076_4	eggNOG-mapper	254397.B6ETB7_9CAUD	DnaB-like helicase N terminal domain	NA
UHGV-1467076_4	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1467076_4	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1467076_4	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1467076_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1467076_5	UniRef90	UniRef90_P03765	Protein ninB	NA
UHGV-1467076_5	eggNOG-mapper	10710.NINB_LAMBD	NinB protein	NA
UHGV-1467076_5	Pfam	PF05772	NinB protein	NinB
UHGV-1467076_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1467076_6	PHROG	phrog_1258	NA	unknown function
UHGV-1467076_6	UniRef90	UniRef90_D3UXG2	Putative Gp44	NA
UHGV-1467076_6	eggNOG-mapper	1147150.K7PHK7_9CAUD	NA	NA
UHGV-1467076_6	Structural annotation	PF13028	NA	NA
UHGV-1467076_7	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1467076_7	UniRef90	UniRef90_P03770	Protein ninG	NA
UHGV-1467076_7	eggNOG-mapper	10761.Q716C3_BPSFV	Bacteriophage Lambda NinG protein	NA
UHGV-1467076_7	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1467076_7	Structural annotation	PF05766	NA	NA
UHGV-1467076_8	PHROG	phrog_268	NA	unknown function
UHGV-1467076_8	UniRef90	UniRef90_P03771	Protein ninH	NA
UHGV-1467076_8	eggNOG-mapper	10710.NINH_LAMBD	Phage NinH protein	NA
UHGV-1467076_8	Pfam	PF06322	Phage NinH protein	Phage_NinH
UHGV-1467076_8	Structural annotation	PF06322	NA	NA
UHGV-1467076_9	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-1467076_9	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1467076_9	UniRef90	UniRef90_A0A152CN92	Serine/threonine protein phosphatase	NA
UHGV-1467076_9	eggNOG-mapper	10761.Q716B9_BPSFV	endonuclease activity	NA
UHGV-1467076_9	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1467076_9	Structural annotation	PF12850, MF_01443, NF008516, COG0622	NA	NA
UHGV-1467076_10	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-1467076_10	UniRef90	UniRef90_E2QJL6	Antitermination protein	NA
UHGV-1467076_10	eggNOG-mapper	1090133.G8EYI3_9CAUD	heat shock protein binding	NA
UHGV-1467076_10	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-1467076_10	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-1467076_11	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-1467076_11	UniRef90	UniRef90_P03705	Antiholin	NA
UHGV-1467076_11	eggNOG-mapper	1147143.K7P6U4_9CAUD	Pfam:Phage_holin_3_1	NA
UHGV-1467076_11	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-1467076_11	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-1467076_11	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-1467076_12	PHROG	phrog_17029	NA	unknown function
UHGV-1467076_12	UniRef90	UniRef90_A0A5Y3BJ08	Lysozyme	NA
UHGV-1467076_12	eggNOG-mapper	432198.K7P890_9CAUD	Phage lysozyme	NA
UHGV-1467076_12	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1467076_12	HAMAP	MF_04109	Endolysin	NA
UHGV-1467076_12	Structural annotation	MF_04109, COG4678	NA	NA
UHGV-1467076_13	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-1467076_13	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-1467076_13	UniRef90	UniRef90_K7P6Y5	Spanin, inner membrane subunit	NA
UHGV-1467076_13	eggNOG-mapper	432198.K7P735_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-1467076_13	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-1467076_13	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-1467076_13	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-1467076_14	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-1467076_14	UniRef90	UniRef90_A0A1Y2XHC5	DNA-binding protein	NA
UHGV-1467076_14	eggNOG-mapper	155148.Q9AZ05_BPHK6	KilA-N domain	NA
UHGV-1467076_14	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-1467076_14	Pfam	PF10549	ORF11CD3 domain	ORF11CD3
UHGV-1467076_14	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-1467076_15	PHROG	phrog_875	NA	unknown function
UHGV-1467076_15	eggNOG-mapper	155148.Q9AZ04_BPHK6	NA	NA
UHGV-1467076_15	Structural annotation	PF01608	NA	NA
UHGV-1467076_16	PHROG	phrog_6254	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1467076_16	UniRef90	UniRef90_A0A8F9DTC2	HNH endonuclease	NA
UHGV-1467076_16	eggNOG-mapper	1115515.EV102420_06_00300	HNH endonuclease	NA
UHGV-1467076_16	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1467076_16	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1467076_16	Structural annotation	PF05551	NA	NA
UHGV-1467076_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1467076_17	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1467076_17	UniRef90	UniRef90_I6R2Z3	Terminase small subunit	NA
UHGV-1467076_17	eggNOG-mapper	1073754.G0ZND3_9VIRU	Terminase small subunit	NA
UHGV-1467076_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1467076_17	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1467076_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1467076_18	UniRef90	UniRef90_A0A0K4T795	Putative phage gp33 TerL	NA
UHGV-1467076_18	eggNOG-mapper	82996.sch_09225	Mu-like prophage FluMu protein gp28	NA
UHGV-1467076_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-1467076_18	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1467076_19	KOfam	K09961	NA	NA
UHGV-1467076_19	PHROG	phrog_12751	NA	unknown function
UHGV-1467076_19	UniRef90	UniRef90_Q83LW6	Putative bacteriophage protein	NA
UHGV-1467076_19	eggNOG-mapper	198214.SF0670	NA	NA
UHGV-1467076_19	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-1467076_19	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-1467076_19	COG	COG3567	NA	NA
UHGV-1467076_19	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-1467076_20	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-1467076_20	UniRef90	UniRef90_A0A377K284	Phage Mu protein gp30	NA
UHGV-1467076_20	eggNOG-mapper	220341.16502203	Phage Mu protein F like protein	NA
UHGV-1467076_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1467076_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1467076_20	COG	COG2369	NA	NA
UHGV-1467076_20	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1467076_21	KOfam	K09960	NA	NA
UHGV-1467076_21	PHROG	phrog_1961	NA	unknown function
UHGV-1467076_21	UniRef90	UniRef90_A0A377N2M6	NA	NA
UHGV-1467076_21	eggNOG-mapper	220341.16502204	protein conserved in bacteria	NA
UHGV-1467076_21	Pfam	PF09979	NA	DUF2213
UHGV-1467076_21	COG	COG3566	NA	NA
UHGV-1467076_21	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-1467076_22	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-1467076_22	UniRef90	UniRef90_I6R2Y8	Putative bacteriophage protein	NA
UHGV-1467076_22	eggNOG-mapper	220341.16502205	NA	NA
UHGV-1467076_22	Structural annotation	PF09956, COG5471	NA	NA
UHGV-1467076_23	PHROG	phrog_264	major head protein	head and packaging
UHGV-1467076_23	UniRef90	UniRef90_I6S8W4	Putative bacteriophage protein	NA
UHGV-1467076_23	eggNOG-mapper	220341.16502206	NA	NA
UHGV-1467076_23	Pfam	PF09950	NA	DUF2184
UHGV-1467076_23	COG	COG4834	NA	NA
UHGV-1467076_23	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-1467076_24	PHROG	phrog_6497	NA	unknown function
UHGV-1467076_24	UniRef90	UniRef90_I6R300	Putative bacteriophage protein	NA
UHGV-1467076_24	eggNOG-mapper	220341.16503074	NA	NA
UHGV-1467076_25	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-1467076_25	UniRef90	UniRef90_A0A7Z1PBM7	NA	NA
UHGV-1467076_25	eggNOG-mapper	220341.16503073	NA	NA
UHGV-1467076_25	Pfam	PF13262	NA	DUF4054
UHGV-1467076_25	Structural annotation	PF13262	NA	NA
UHGV-1467076_26	PHROG	phrog_222	tail protein	tail
UHGV-1467076_26	UniRef90	UniRef90_A0A0P7MDL1	Bacteriophage protein	NA
UHGV-1467076_26	eggNOG-mapper	220341.16502209	NA	NA
UHGV-1467076_27	PHROG	phrog_939	head protein	head and packaging
UHGV-1467076_27	UniRef90	UniRef90_A0A0H0INX3	Head-tail adaptor	NA
UHGV-1467076_27	eggNOG-mapper	220341.16502210	NA	NA
UHGV-1467076_27	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1467076_28	PHROG	phrog_1973	NA	unknown function
UHGV-1467076_28	UniRef90	UniRef90_I6R2Y3	Putative bacteriophage protein	NA
UHGV-1467076_28	eggNOG-mapper	220341.16502211	NA	NA
UHGV-1467076_28	Structural annotation	PF09646	NA	NA
UHGV-1467076_29	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1467076_29	UniRef90	UniRef90_I6S8V9	Putative bacteriophage protein	NA
UHGV-1467076_29	eggNOG-mapper	220341.16502212	NA	NA
UHGV-1467076_29	Pfam	PF11863	NA	DUF3383
UHGV-1467076_29	Structural annotation	PF11863, COG3497	NA	NA
UHGV-1467076_30	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-1467076_30	UniRef90	UniRef90_A0A4P8YJG6	NA	NA
UHGV-1467076_30	eggNOG-mapper	1115515.EV102420_34_00300	NA	NA
UHGV-1467076_30	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-1467076_30	Structural annotation	PF11681, TIGR02126, COG5437	NA	NA
UHGV-1467076_31	PHROG	phrog_1688	tail assembly chaperone	tail
UHGV-1467076_31	UniRef90	UniRef90_H3RFB6	Putative bacteriophage protein	NA
UHGV-1467076_31	eggNOG-mapper	1115515.EV102420_34_00310	NA	NA
UHGV-1467076_31	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-1467076_31	Structural annotation	PF21822	NA	NA
UHGV-1467076_32	PHROG	phrog_12506	tail length tape measure protein	tail
UHGV-1467076_32	UniRef90	UniRef90_A0A377A418	Putative lytic transglycosylase, catalytic	NA
UHGV-1467076_32	eggNOG-mapper	1005994.GTGU_01769	Belongs to the WXG100 family	NA
UHGV-1467076_32	COG	COG5283	Phage-related tail protein	NA