UHGV-1467132

Genome information

Genome length 24,027 bps

CDS count 29

Completeness 61.28% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-1467132
vOTU ID	vOTU-035556
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0175727
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.83
Jumbo phage	No

Genome content
Genome length	24,027 bps
GC content	38.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	94.42%
Average CDS length	784.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1467132_2	PHROG	phrog_8955	NA	unknown function
UHGV-1467132_3	PHROG	phrog_5859	NA	unknown function
UHGV-1467132_3	eggNOG-mapper	1201292.DR75_1513	NA	NA
UHGV-1467132_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1467132_4	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1467132_4	UniRef90	UniRef90_J6Z1D2	Putative terminase small subunit	NA
UHGV-1467132_4	eggNOG-mapper	565664.EFXG_01157	Terminase small subunit	NA
UHGV-1467132_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1467132_4	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1467132_4	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1467132_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1467132_5	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1467132_5	UniRef90	UniRef90_C9B732	Terminase large subunit	NA
UHGV-1467132_5	eggNOG-mapper	1158614.I592_02273	Terminase RNAseH like domain	NA
UHGV-1467132_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1467132_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1467132_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1467132_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-1467132_5	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1467132_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1467132_6	PHROG	phrog_64	portal protein	head and packaging
UHGV-1467132_6	UniRef90	UniRef90_A0A829A3V1	SPP1 family phage portal protein	NA
UHGV-1467132_6	eggNOG-mapper	1486428.A0A097BY86_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1467132_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1467132_6	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1467132_6	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1467132_7	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1467132_7	UniRef90	UniRef90_C9B734	Phage_Mu_F domain-containing protein	NA
UHGV-1467132_7	eggNOG-mapper	565664.EFXG_01162	Phage Mu protein F like protein	NA
UHGV-1467132_7	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1467132_7	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1467132_7	COG	COG2369	NA	NA
UHGV-1467132_7	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1467132_8	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1467132_8	UniRef90	UniRef90_UPI001CF52961	NA	NA
UHGV-1467132_8	eggNOG-mapper	1486428.A0A097BY91_9CAUD	aminoacyl-tRNA ligase activity	NA
UHGV-1467132_8	Pfam	PF14265	NA	DUF4355
UHGV-1467132_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-1467132_9	UniRef90	UniRef90_UPI0008D49F30	phage major capsid protein	NA
UHGV-1467132_9	eggNOG-mapper	1486428.A0A097BY54_9CAUD	peptidase activity	NA
UHGV-1467132_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1467132_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1467132_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1467132_10	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1467132_10	UniRef90	UniRef90_UPI001A8C164C	Ig-like domain-containing protein	NA
UHGV-1467132_10	eggNOG-mapper	1108070.G8FUY7_9CAUD	peptidase activity	NA
UHGV-1467132_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1467132_11	UniRef90	UniRef90_A0A097BY55	Head-tail connector domain protein	NA
UHGV-1467132_11	eggNOG-mapper	1486428.A0A097BY55_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-1467132_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1467132_11	Structural annotation	PF05135	NA	NA
UHGV-1467132_12	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1467132_12	UniRef90	UniRef90_Q38175	B3 protein (Fragment)	NA
UHGV-1467132_12	eggNOG-mapper	663241.C9E2J7_9CAUD	NA	NA
UHGV-1467132_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1467132_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1467132_13	UniRef90	UniRef90_J7CX17	TP901-1 ORF40-like protein	NA
UHGV-1467132_13	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1467132_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1467132_14	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1467132_14	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-1467132_14	eggNOG-mapper	320843.Q4ZBR0_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1467132_14	Structural annotation	PF17375	NA	NA
UHGV-1467132_15	eggNOG-mapper	565664.EFXG_01171	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1467132_16	PHROG	phrog_176	tail terminator	connector
UHGV-1467132_16	UniRef90	UniRef90_UPI000A339243	phage capsid protein	NA
UHGV-1467132_16	eggNOG-mapper	565664.EFXG_01172	NA	NA
UHGV-1467132_16	Structural annotation	PF11367	NA	NA
UHGV-1467132_17	PHROG	phrog_238	major tail protein	tail
UHGV-1467132_17	UniRef90	UniRef90_A0A0M2B0N7	Phage major tail protein, TP901-1 family	NA
UHGV-1467132_17	eggNOG-mapper	565664.EFXG_01173	Phage tail tube protein	NA
UHGV-1467132_17	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1467132_17	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1467132_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1467132_18	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1467132_18	UniRef90	UniRef90_UPI001A8DA6DF	tail assembly chaperone	NA
UHGV-1467132_18	eggNOG-mapper	565664.EFXG_01174	Phage tail assembly chaperone protein, TAC	NA
UHGV-1467132_18	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1467132_18	Structural annotation	PF12363	NA	NA
UHGV-1467132_19	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1467132_19	UniRef90	UniRef90_A0A7U8IL94	NA	NA
UHGV-1467132_19	eggNOG-mapper	565664.EFXG_01175	NA	NA
UHGV-1467132_20	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1467132_20	UniRef90	UniRef90_A0A829A1W7	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1467132_20	eggNOG-mapper	565664.EFXG_01176	Phage tail tape measure protein, TP901 family	NA
UHGV-1467132_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1467132_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1467132_20	COG	COG5283	Phage-related tail protein	NA
UHGV-1467132_20	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1467132_21	PHROG	phrog_5163	minor tail protein	tail
UHGV-1467132_21	UniRef90	UniRef90_A0A0M2B121	Phage tail component protein	NA
UHGV-1467132_21	eggNOG-mapper	565664.EFXG_01177	Phage tail protein	NA
UHGV-1467132_21	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1467132_21	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1467132_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-1467132_21	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1467132_22	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1467132_22	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1467132_22	UniRef90	UniRef90_A0A6N3BG50	Murein DD-endopeptidase MepM	NA
UHGV-1467132_22	eggNOG-mapper	565664.EFXG_01178	heme binding	NA
UHGV-1467132_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1467132_22	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1467132_22	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1467132_22	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1467132_22	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1467132_22	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-1467132_23	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-1467132_23	PHROG	phrog_7158	NA	unknown function
UHGV-1467132_23	UniRef90	UniRef90_C9BWV6	Predicted protein	NA
UHGV-1467132_23	eggNOG-mapper	565664.EFXG_01759	NA	NA
UHGV-1467132_23	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1467132_23	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1467132_23	Structural annotation	PF10651, PF14582, MF_00905, NF008359, COG1409	NA	NA
UHGV-1467132_24	PHROG	phrog_11663	minor head protein	head and packaging
UHGV-1467132_24	UniRef90	UniRef90_C9BWV7	Predicted protein	NA
UHGV-1467132_24	eggNOG-mapper	565664.EFXG_01758	NA	NA
UHGV-1467132_25	PHROG	phrog_10054	NA	unknown function
UHGV-1467132_25	UniRef90	UniRef90_UPI000699FB30	BppU family phage baseplate upper protein	NA
UHGV-1467132_25	eggNOG-mapper	1104325.M7W_1369	InterPro IPR018913 Domain of	NA
UHGV-1467132_25	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1467132_25	Structural annotation	PF10651, PF18573, PF01105, NF033147, NF032891	NA	NA
UHGV-1467132_26	PHROG	phrog_1536	NA	unknown function
UHGV-1467132_26	eggNOG-mapper	1104325.M7W_1370	NA	NA
UHGV-1467132_27	PHROG	phrog_1009	NA	unknown function
UHGV-1467132_28	PHROG	phrog_881	holin	lysis
UHGV-1467132_28	UniRef90	UniRef90_C9AN11	Holin	NA
UHGV-1467132_28	eggNOG-mapper	768486.EHR_09645	Putative phage holin Dp-1	NA
UHGV-1467132_28	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1467132_28	Structural annotation	PF16938, COG3237	NA	NA
UHGV-1467132_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1467132_29	PHROG	phrog_2338	endolysin	lysis
UHGV-1467132_29	UniRef90	UniRef90_UPI001F093CFB	peptidoglycan recognition protein family protein	NA
UHGV-1467132_29	eggNOG-mapper	565664.EFXG_04102	Ami_2	NA
UHGV-1467132_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1467132_29	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1467132_29	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA