UHGV-1467911

Genome information

Genome length 23,681 bps

CDS count 41

Completeness 54.82% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-1467911
vOTU ID	vOTU-033934
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0173380
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.96
Jumbo phage	No

Genome content
Genome length	23,681 bps
GC content	55.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.84%
Average CDS length	528.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1467911_1	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-1467911_1	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1467911_2	PHROG	phrog_15239	NA	unknown function
UHGV-1467911_2	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-1467911_3	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1467911_3	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-1467911_3	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-1467911_3	Pfam	PF13252	NA	DUF4043
UHGV-1467911_3	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1467911_3	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1467911_4	PHROG	phrog_13908	NA	unknown function
UHGV-1467911_4	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1467911_5	Structural annotation	NF011128, COG2868	NA	NA
UHGV-1467911_6	PHROG	phrog_156	portal protein	head and packaging
UHGV-1467911_6	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-1467911_6	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-1467911_6	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1467911_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1467911_7	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1467911_7	UniRef90	UniRef90_A0A1Y4WJ48	Terminase-like family protein	NA
UHGV-1467911_7	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-1467911_7	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1467911_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-1467911_7	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1467911_8	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1467911_8	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-1467911_8	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1467911_8	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1467911_8	Structural annotation	PF16677	NA	NA
UHGV-1467911_10	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-1467911_14	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-1467911_15	PHROG	phrog_3136	NA	unknown function
UHGV-1467911_15	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-1467911_15	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1467911_15	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1467911_16	PHROG	phrog_38832	NA	unknown function
UHGV-1467911_16	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1467911_16	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-1467911_17	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-1467911_18	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-1467911_18	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-1467911_19	PHROG	phrog_27610	NA	unknown function
UHGV-1467911_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1467911_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1467911_20	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1467911_20	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1467911_20	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1467911_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1467911_20	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1467911_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1467911_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1467911_21	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1467911_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1467911_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1467911_22	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1467911_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1467911_24	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-1467911_24	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-1467911_24	Pfam	PF06356	NA	DUF1064
UHGV-1467911_24	Structural annotation	PF06356	NA	NA
UHGV-1467911_27	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1467911_27	UniRef90	UniRef90_A0A3M2DYE6	NA	NA
UHGV-1467911_27	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-1467911_27	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-1467911_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1467911_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1467911_28	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-1467911_28	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-1467911_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1467911_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1467911_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1467911_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1467911_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1467911_29	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1467911_29	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1467911_29	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-1467911_29	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1467911_29	Pfam	PF03837	RecT family	RecT
UHGV-1467911_29	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1467911_29	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1467911_29	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1467911_30	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1467911_30	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-1467911_30	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-1467911_30	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1467911_30	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1467911_30	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1467911_30	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1467911_34	Structural annotation	PF11112, COG3311	NA	NA
UHGV-1467911_35	UniRef90	UniRef90_A0A413FWV9	XRE family transcriptional regulator	NA
UHGV-1467911_35	eggNOG-mapper	411459.RUMOBE_01022	sequence-specific DNA binding	NA
UHGV-1467911_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1467911_35	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1467911_35	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1467911_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1467911_36	UniRef90	UniRef90_UPI0006850BB0	helix-turn-helix transcriptional regulator	NA
UHGV-1467911_36	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1467911_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1467911_36	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1467911_37	Structural annotation	PF13601, MF_01819, TIGR02337, COG3432	NA	NA
UHGV-1467911_39	UniRef90	UniRef90_UPI001BB4762F	DnaJ domain-containing protein	NA
UHGV-1467911_39	eggNOG-mapper	715451.ambt_14505	NA	NA
UHGV-1467911_40	eggNOG-mapper	1280676.AUJO01000016_gene1107	Putative restriction endonuclease	NA
UHGV-1467911_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1467911_40	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-1467911_40	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-1467911_41	KOfam	K14059	int; integrase	NA
UHGV-1467911_41	PHROG	phrog_1	integrase	integration and excision
UHGV-1467911_41	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-1467911_41	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1467911_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1467911_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1467911_41	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA