UHGV-1468064

Genome information

Genome length 35,598 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-1468064
vOTU ID	vOTU-009020
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0242632
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.21
Jumbo phage	No

Genome content
Genome length	35,598 bps
GC content	33.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.58%
Average CDS length	557.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1468064_1	PHROG	phrog_5070	NA	unknown function
UHGV-1468064_1	UniRef90	UniRef90_A0A373IMM1	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-1468064_1	eggNOG-mapper	1094553.MCS_00034	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-1468064_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1468064_3	Structural annotation	PF11417	NA	NA
UHGV-1468064_4	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1468064_4	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-1468064_4	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1468064_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1468064_4	Structural annotation	PF04492, MF_01819, NF040939, COG3355	NA	NA
UHGV-1468064_5	UniRef90	UniRef90_A0A7U9GQY0	HTH_17 domain-containing protein	NA
UHGV-1468064_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1468064_5	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-1468064_6	PHROG	phrog_2113	NA	unknown function
UHGV-1468064_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1468064_11	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1468064_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1468064_11	UniRef90	UniRef90_A0A3E3EGN5	XRE family transcriptional regulator	NA
UHGV-1468064_11	eggNOG-mapper	697303.Thewi_2448	Helix-turn-helix XRE-family like proteins	NA
UHGV-1468064_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1468064_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1468064_11	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1468064_12	eggNOG-mapper	658659.HMPREF0983_03305	NA	NA
UHGV-1468064_14	KOfam	K14059	int; integrase	NA
UHGV-1468064_14	PHROG	phrog_1	integrase	integration and excision
UHGV-1468064_14	UniRef90	UniRef90_UPI000E46F6FE	site-specific integrase	NA
UHGV-1468064_14	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-1468064_14	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1468064_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1468064_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1468064_14	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-1468064_16	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1468064_16	PHROG	phrog_3088	amidase	lysis
UHGV-1468064_16	UniRef90	UniRef90_UPI001079B0A7	SH3 domain-containing protein	NA
UHGV-1468064_16	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1468064_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1468064_16	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1468064_16	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1468064_16	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-1468064_18	PHROG	phrog_33625	holin	lysis
UHGV-1468064_18	UniRef90	UniRef90_A0A6N3AF02	Bacteriophage holin	NA
UHGV-1468064_18	eggNOG-mapper	1196031.ALEG01000039_gene1391	Bacteriophage holin	NA
UHGV-1468064_18	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1468064_18	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1468064_18	COG	COG5546	NA	NA
UHGV-1468064_18	Structural annotation	COG5546	NA	NA
UHGV-1468064_19	PHROG	phrog_24267	NA	unknown function
UHGV-1468064_19	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1468064_19	COG	COG4675	Phage tail collar domain	NA
UHGV-1468064_19	Structural annotation	PF10651	NA	NA
UHGV-1468064_20	PHROG	phrog_3558	tail protein	tail
UHGV-1468064_20	UniRef90	UniRef90_A0A6N3AEF7	Peptidase S74 domain-containing protein	NA
UHGV-1468064_20	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-1468064_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1468064_20	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1468064_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1468064_20	COG	COG4926	Phage-related protein	NA
UHGV-1468064_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1468064_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1468064_21	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-1468064_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-1468064_22	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1468064_22	UniRef90	UniRef90_UPI000E4708D5	phage tail tape measure protein	NA
UHGV-1468064_22	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-1468064_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1468064_22	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1468064_22	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1468064_23	PHROG	phrog_706	NA	unknown function
UHGV-1468064_23	UniRef90	UniRef90_UPI000E52BFC1	Gp15 family bacteriophage protein	NA
UHGV-1468064_23	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-1468064_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1468064_23	Structural annotation	PF06854	NA	NA
UHGV-1468064_24	Structural annotation	PF10666	NA	NA
UHGV-1468064_25	PHROG	phrog_820	major tail protein	tail
UHGV-1468064_25	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-1468064_25	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1468064_25	COG	COG5492	NA	NA
UHGV-1468064_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1468064_26	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1468064_26	Structural annotation	PF12691	NA	NA
UHGV-1468064_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1468064_27	UniRef90	UniRef90_A0A6N3ACU8	Minor capsid protein	NA
UHGV-1468064_27	eggNOG-mapper	1027396.LMOSA_9610	Minor capsid protein	NA
UHGV-1468064_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1468064_27	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1468064_28	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-1468064_28	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1468064_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1468064_29	eggNOG-mapper	1497679.EP56_07555	NA	NA
UHGV-1468064_30	PHROG	phrog_422	major head protein	head and packaging
UHGV-1468064_30	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-1468064_30	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-1468064_31	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1468064_31	UniRef90	UniRef90_UPI0013141DAE	NUMOD4 domain-containing protein	NA
UHGV-1468064_31	eggNOG-mapper	1458851.X2KXT0_9CAUD	HNH endonuclease	NA
UHGV-1468064_31	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1468064_31	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1468064_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1468064_31	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1468064_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-1468064_32	UniRef90	UniRef90_A0A488ACQ7	Major capsid protein	NA
UHGV-1468064_32	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-1468064_34	eggNOG-mapper	596323.HMPREF0554_1580	Belongs to the Dps family	NA
UHGV-1468064_34	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-1468064_34	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-1468064_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1468064_36	UniRef90	UniRef90_A0A6N3A974	Phage minor capsid protein 2	NA
UHGV-1468064_36	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1468064_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1468064_36	COG	COG2369	NA	NA
UHGV-1468064_36	Structural annotation	PF06152	NA	NA
UHGV-1468064_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-1468064_37	UniRef90	UniRef90_A0A6N3AB16	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1468064_37	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-1468064_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1468064_37	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1468064_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1468064_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1468064_38	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1468064_38	UniRef90	UniRef90_A0A6N3ALZ5	Terminase-like family protein	NA
UHGV-1468064_38	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-1468064_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1468064_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1468064_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-1468064_38	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1468064_39	UniRef90	UniRef90_A0A3E3EF98	Helix-turn-helix domain-containing protein	NA
UHGV-1468064_39	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-1468064_39	Structural annotation	PF13542	NA	NA
UHGV-1468064_44	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1468064_44	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1468064_44	UniRef90	UniRef90_UPI001C2BB323	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1468064_44	eggNOG-mapper	1232437.KL662003_gene4480	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1468064_44	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1468064_44	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1468064_46	eggNOG-mapper	1123263.AUKY01000072_gene2097	NA	NA
UHGV-1468064_47	PHROG	phrog_15198	NA	unknown function
UHGV-1468064_47	UniRef90	UniRef90_A7VTC0	NA	NA
UHGV-1468064_47	Pfam	PF04448	NA	DUF551
UHGV-1468064_49	AcrCatalog	cluster_200940	NA	NA
UHGV-1468064_50	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-1468064_51	PHROG	phrog_22292	NA	unknown function
UHGV-1468064_51	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-1468064_52	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1468064_52	UniRef90	UniRef90_A0A6N3AFA8	NA	NA
UHGV-1468064_52	eggNOG-mapper	1582152.A0A0A8WI22_9CAUD	NA	NA
UHGV-1468064_52	Pfam	PF12961	NA	DUF3850
UHGV-1468064_52	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-1468064_53	PHROG	phrog_7566	NA	unknown function
UHGV-1468064_53	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-1468064_54	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1468064_54	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1468064_54	UniRef90	UniRef90_U3PDU0	Putative Holliday junction resolvase	NA
UHGV-1468064_54	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-1468064_54	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1468064_54	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1468064_55	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1468064_55	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-1468064_55	Structural annotation	PF05772	NA	NA
UHGV-1468064_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1468064_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1468064_56	UniRef90	UniRef90_A0A3E3EF61	Single-stranded DNA-binding protein	NA
UHGV-1468064_56	eggNOG-mapper	1232446.BAIE02000064_gene3707	Single-strand binding protein family	NA
UHGV-1468064_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1468064_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1468064_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1468064_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1468064_56	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1468064_58	PHROG	phrog_14970	NA	unknown function
UHGV-1468064_58	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-1468064_58	eggNOG-mapper	428127.EUBDOL_01248	double-strand break repair protein	NA
UHGV-1468064_58	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1468064_58	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1468064_58	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1468064_60	PHROG	phrog_7964	NA	unknown function
UHGV-1468064_60	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1468064_60	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1468064_60	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA