UHGV-1468293

Genome information

vOTU vOTU-032094

Genome length 22,587 bps

CDS count 27

Completeness 56.53% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-1468293
vOTU ID	vOTU-032094
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0165635
BioSample	SAMN06350170
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.92
Jumbo phage	No

Genome content
Genome length	22,587 bps
GC content	37.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	95.38%
Average CDS length	800.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1468293_1	UniRef90	UniRef90_A0A1X4JB54	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-1468293_1	eggNOG-mapper	565664.EFXG_04102	Ami_2	NA
UHGV-1468293_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1468293_2	PHROG	phrog_881	holin	lysis
UHGV-1468293_2	UniRef90	UniRef90_A0A0V7Y5Y4	Holin	NA
UHGV-1468293_2	eggNOG-mapper	1104325.M7W_1373	Putative phage holin Dp-1	NA
UHGV-1468293_2	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1468293_2	Structural annotation	PF16938	NA	NA
UHGV-1468293_3	PHROG	phrog_1009	NA	unknown function
UHGV-1468293_3	eggNOG-mapper	1139219.I569_00098	NA	NA
UHGV-1468293_4	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-1468293_4	PHROG	phrog_10054	NA	unknown function
UHGV-1468293_4	UniRef90	UniRef90_UPI00137AC3B8	BppU family phage baseplate upper protein	NA
UHGV-1468293_4	eggNOG-mapper	1104325.M7W_1369	InterPro IPR018913 Domain of	NA
UHGV-1468293_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1468293_4	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-1468293_5	PHROG	phrog_4577	tail protein	tail
UHGV-1468293_5	eggNOG-mapper	1104325.M7W_1368	NA	NA
UHGV-1468293_6	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-1468293_6	UniRef90	UniRef90_UPI00189A61D2	phage tail protein	NA
UHGV-1468293_6	eggNOG-mapper	1104325.M7W_1367	Prophage endopeptidase tail	NA
UHGV-1468293_6	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1468293_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1468293_6	COG	COG4926	Phage-related protein	NA
UHGV-1468293_6	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1468293_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1468293_7	UniRef90	UniRef90_S4FH66	Phage tail component protein	NA
UHGV-1468293_7	eggNOG-mapper	1104325.M7W_1366	Phage tail protein	NA
UHGV-1468293_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1468293_7	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1468293_8	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-1468293_8	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-1468293_8	UniRef90	UniRef90_U2QDL4	TMP_3 domain-containing protein	NA
UHGV-1468293_8	eggNOG-mapper	1140001.I571_02119	Transglycosylase SLT domain	NA
UHGV-1468293_8	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1468293_8	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1468293_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1468293_8	Structural annotation	PF20155, PF18013, TIGR01760, COG3941, COG3953	NA	NA
UHGV-1468293_9	PHROG	phrog_706	NA	unknown function
UHGV-1468293_9	UniRef90	UniRef90_C9AN02	Bacteriophage Gp15 protein	NA
UHGV-1468293_9	eggNOG-mapper	1104325.M7W_1364	Bacteriophage Gp15 protein	NA
UHGV-1468293_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1468293_9	Structural annotation	PF06854	NA	NA
UHGV-1468293_10	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-1468293_10	UniRef90	UniRef90_C9AN01	Predicted protein	NA
UHGV-1468293_10	eggNOG-mapper	1104325.M7W_1363	NA	NA
UHGV-1468293_10	Structural annotation	PF10666	NA	NA
UHGV-1468293_12	PHROG	phrog_820	major tail protein	tail
UHGV-1468293_12	UniRef90	UniRef90_A0A345FQJ9	Capsid protein	NA
UHGV-1468293_12	eggNOG-mapper	1140001.I571_02115	domain, Protein	NA
UHGV-1468293_12	COG	COG5492	NA	NA
UHGV-1468293_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1468293_13	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1468293_13	UniRef90	UniRef90_UPI0018A2E21A	capsid protein	NA
UHGV-1468293_13	eggNOG-mapper	1140001.I571_02114	Minor capsid protein from bacteriophage	NA
UHGV-1468293_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1468293_13	Structural annotation	PF12691	NA	NA
UHGV-1468293_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1468293_14	UniRef90	UniRef90_A0A345FQJ7	Capsid protein	NA
UHGV-1468293_14	eggNOG-mapper	1158601.I585_00692	Minor capsid protein	NA
UHGV-1468293_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1468293_14	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1468293_15	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1468293_15	UniRef90	UniRef90_UPI00090013CF	putative minor capsid protein	NA
UHGV-1468293_15	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-1468293_15	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1468293_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1468293_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1468293_16	UniRef90	UniRef90_A0A0B8QYX3	Coenzyme F420-reducing hydrogenase, beta subunit	NA
UHGV-1468293_16	eggNOG-mapper	1140001.I571_02111	NA	NA
UHGV-1468293_17	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1468293_17	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1468293_17	UniRef90	UniRef90_A0A828ZU37	BIG2 domain-containing protein	NA
UHGV-1468293_17	eggNOG-mapper	1140001.I571_02110	domain, Protein	NA
UHGV-1468293_17	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1468293_17	COG	COG5492	NA	NA
UHGV-1468293_17	Structural annotation	PF02368	NA	NA
UHGV-1468293_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-1468293_18	UniRef90	UniRef90_A0A829A4D2	BIG2 domain-containing protein	NA
UHGV-1468293_18	eggNOG-mapper	1140001.I571_02109	NA	NA
UHGV-1468293_18	Structural annotation	PF20911	NA	NA
UHGV-1468293_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1468293_19	UniRef90	UniRef90_S4E2G7	Phage minor structural protein GP20	NA
UHGV-1468293_19	eggNOG-mapper	1158614.I592_01120	Phage minor structural protein GP20	NA
UHGV-1468293_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1468293_19	Structural annotation	PF06810	NA	NA
UHGV-1468293_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1468293_20	UniRef90	UniRef90_S4EI20	Phage minor capsid protein 2	NA
UHGV-1468293_20	eggNOG-mapper	1140001.I571_02107	Phage minor capsid protein 2	NA
UHGV-1468293_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1468293_20	Structural annotation	PF06152	NA	NA
UHGV-1468293_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-1468293_21	UniRef90	UniRef90_A0A2G0EAN2	Capsid protein	NA
UHGV-1468293_21	eggNOG-mapper	1104325.M7W_1352	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1468293_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1468293_21	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1468293_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1468293_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1468293_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1468293_22	UniRef90	UniRef90_S4EAE9	Phage terminase, large subunit, PBSX family	NA
UHGV-1468293_22	eggNOG-mapper	1104325.M7W_1351	Terminase RNAseH like domain	NA
UHGV-1468293_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1468293_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1468293_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1468293_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1468293_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1468293_23	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1468293_23	UniRef90	UniRef90_UPI00196B2C2C	phage terminase small subunit	NA
UHGV-1468293_23	eggNOG-mapper	1140001.I571_02104	DNA packaging	NA
UHGV-1468293_23	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1468293_23	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1468293_23	COG	COG5484	NA	NA
UHGV-1468293_23	Structural annotation	NF040601, COG5484	NA	NA
UHGV-1468293_24	PHROG	phrog_1202	NA	unknown function
UHGV-1468293_24	UniRef90	UniRef90_C9APX8	Predicted protein	NA
UHGV-1468293_24	eggNOG-mapper	1140001.I571_01149	NA	NA
UHGV-1468293_24	Structural annotation	PF18789	NA	NA
UHGV-1468293_25	PHROG	phrog_9904	NA	unknown function
UHGV-1468293_25	UniRef90	UniRef90_A0A132P4F8	Thymidylate synthase	NA
UHGV-1468293_26	PHROG	phrog_1090	NA	unknown function
UHGV-1468293_26	UniRef90	UniRef90_A0A0Z8QA17	CRISPR associated protein Cas2	NA
UHGV-1468293_26	eggNOG-mapper	565664.EFXG_02842	NA	NA
UHGV-1468293_26	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-1468293_27	PHROG	phrog_10973	NA	unknown function