UHGV-1468360

Genome information

Genome length 21,386 bps

CDS count 31

Completeness 60.69% (medium-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-1468360
vOTU ID	vOTU-035576
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0156766
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.87
Jumbo phage	No

Genome content
Genome length	21,386 bps
GC content	28.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	95.38%
Average CDS length	659.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1468360_3	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1468360_3	UniRef90	UniRef90_A0A1Q6K3Q9	HNH domain-containing protein	NA
UHGV-1468360_3	eggNOG-mapper	471855.Shel_08210	endonuclease activity	NA
UHGV-1468360_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1468360_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1468360_3	Structural annotation	NF008448	NA	NA
UHGV-1468360_5	PHROG	phrog_1066	NA	unknown function
UHGV-1468360_5	UniRef90	UniRef90_W0U724	Phage terminase-like protein, small subunit	NA
UHGV-1468360_5	eggNOG-mapper	411465.PEPMIC_00731	NA	NA
UHGV-1468360_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1468360_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1468360_6	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-1468360_6	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-1468360_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1468360_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1468360_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1468360_6	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1468360_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-1468360_7	UniRef90	UniRef90_UPI001BEA918C	phage portal protein	NA
UHGV-1468360_7	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1468360_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1468360_7	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1468360_7	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1468360_7	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1468360_8	KOfam	K06904	NA	NA
UHGV-1468360_8	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1468360_8	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-1468360_8	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-1468360_8	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1468360_8	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1468360_8	COG	COG3740	Phage head maturation protease	NA
UHGV-1468360_8	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1468360_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-1468360_9	UniRef90	UniRef90_A0A356CXS9	Phage major capsid protein	NA
UHGV-1468360_9	eggNOG-mapper	1160721.RBI_I01582	Phage capsid family	NA
UHGV-1468360_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1468360_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1468360_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1468360_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1468360_10	PHROG	phrog_5223	neck protein	connector
UHGV-1468360_10	UniRef90	UniRef90_UPI0003FE9443	head-tail connector protein	NA
UHGV-1468360_10	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-1468360_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1468360_11	UniRef90	UniRef90_A0A098AU87	Gp16_SPP1: putative phage head-tail adaptor	NA
UHGV-1468360_11	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-1468360_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1468360_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1468360_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1468360_12	UniRef90	UniRef90_UPI001748A5D5	HK97 gp10 family phage protein	NA
UHGV-1468360_12	eggNOG-mapper	1033744.CAEL01000029_gene1278	NA	NA
UHGV-1468360_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1468360_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1468360_13	UniRef90	UniRef90_Q0H234	Aminopeptidase	NA
UHGV-1468360_13	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-1468360_13	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1468360_14	PHROG	phrog_88	major tail protein	tail
UHGV-1468360_14	UniRef90	UniRef90_A0A1E8RGF9	Phage tail protein	NA
UHGV-1468360_14	eggNOG-mapper	1235802.C823_05271	phage major tail protein, phi13 family	NA
UHGV-1468360_14	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-1468360_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1468360_14	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1468360_15	PHROG	phrog_709	NA	unknown function
UHGV-1468360_15	Structural annotation	PF11836	NA	NA
UHGV-1468360_17	PHROG	phrog_31409	tail length tape measure protein	tail
UHGV-1468360_17	UniRef90	UniRef90_UPI00189AF390	phage tail tape measure protein	NA
UHGV-1468360_17	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-1468360_17	COG	COG5283	Phage-related tail protein	NA
UHGV-1468360_19	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-1468360_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-1468360_19	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1468360_20	PHROG	phrog_7064	tail protein	tail
UHGV-1468360_20	UniRef90	UniRef90_R6DQ52	Putative phage protein	NA
UHGV-1468360_20	eggNOG-mapper	1140001.I571_01167	NA	NA
UHGV-1468360_20	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-1468360_21	Structural annotation	PF20747	NA	NA
UHGV-1468360_22	PHROG	phrog_372	tail protein	tail
UHGV-1468360_22	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-1468360_22	COG	COG4675	Phage tail collar domain	NA
UHGV-1468360_22	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-1468360_23	KOfam	K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	NA
UHGV-1468360_23	PHROG	phrog_22899	NA	unknown function
UHGV-1468360_23	Pfam	PF03382	NA	DUF285
UHGV-1468360_23	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1468360_23	Structural annotation	PF03382	NA	NA
UHGV-1468360_25	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-1468360_25	PHROG	phrog_6320	tail fiber protein	tail
UHGV-1468360_25	eggNOG-mapper	619693.HMPREF6745_2540	domain, Protein	NA
UHGV-1468360_25	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1468360_25	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1468360_26	Structural annotation	PF02973	NA	NA
UHGV-1468360_29	PHROG	phrog_13256	NA	unknown function
UHGV-1468360_29	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-1468360_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1468360_30	PHROG	phrog_9611	endolysin	lysis
UHGV-1468360_30	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-1468360_30	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1468360_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1468360_30	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1468360_30	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1468360_30	Structural annotation	PF01510, PF18342, PF08239, NF040678, NF008758, COG5632	NA	NA