UHGV-1468536

Genome information

Genome length 30,833 bps

CDS count 49

Completeness 77.17% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-1468536
vOTU ID	vOTU-016238
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0215975
BioSample	SAMEA3182112
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.18
Jumbo phage	No

Genome content
Genome length	30,833 bps
GC content	50.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.33%
Average CDS length	600.61 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1468536_1	eggNOG-mapper	644107.SL1157_0518	NA	NA
UHGV-1468536_2	PHROG	phrog_199	holin	lysis
UHGV-1468536_2	UniRef90	UniRef90_A0A2V2FS45	Holin	NA
UHGV-1468536_2	eggNOG-mapper	1235800.C819_02923	Bacteriophage holin family	NA
UHGV-1468536_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1468536_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1468536_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1468536_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1468536_3	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-1468536_3	PHROG	phrog_1493	endolysin	lysis
UHGV-1468536_3	UniRef90	UniRef90_A0A316RRK6	NlpC/P60 domain-containing protein	NA
UHGV-1468536_3	eggNOG-mapper	1229172.JQFA01000004_gene1793	Phage lysozyme	NA
UHGV-1468536_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1468536_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1468536_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1468536_3	Structural annotation	PF00877, PF00112, PF01471, NF033742, COG0791, COG4870	NA	NA
UHGV-1468536_4	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-1468536_4	PHROG	phrog_30034	NA	unknown function
UHGV-1468536_4	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-1468536_4	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-1468536_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1468536_4	Structural annotation	PF14600	NA	NA
UHGV-1468536_6	Structural annotation	PF21722	NA	NA
UHGV-1468536_7	PHROG	phrog_9534	head protein	head and packaging
UHGV-1468536_7	UniRef90	UniRef90_A7GI58	Putative phage structural protein	NA
UHGV-1468536_7	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-1468536_8	PHROG	phrog_538	minor tail protein	tail
UHGV-1468536_8	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1468536_8	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-1468536_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1468536_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1468536_9	PHROG	phrog_36410	NA	unknown function
UHGV-1468536_9	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-1468536_9	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-1468536_9	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1468536_10	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1468536_10	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1468536_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1468536_12	PHROG	phrog_18646	NA	unknown function
UHGV-1468536_12	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-1468536_13	PHROG	phrog_885	major tail protein	tail
UHGV-1468536_13	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1468536_13	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1468536_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1468536_14	PHROG	phrog_17405	head protein	head and packaging
UHGV-1468536_14	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-1468536_14	Structural annotation	PF11367	NA	NA
UHGV-1468536_15	PHROG	phrog_1233	NA	unknown function
UHGV-1468536_15	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-1468536_16	PHROG	phrog_17977	NA	unknown function
UHGV-1468536_16	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1468536_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1468536_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-1468536_19	UniRef90	UniRef90_F8UBB7	p22 coat protein	NA
UHGV-1468536_19	eggNOG-mapper	673376.F2VHW8_9CAUD	viral capsid	NA
UHGV-1468536_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1468536_20	Structural annotation	PF06810	NA	NA
UHGV-1468536_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1468536_21	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-1468536_21	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1468536_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1468536_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1468536_21	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1468536_22	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-1468536_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1468536_23	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-1468536_23	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1468536_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1468536_23	COG	COG2369	NA	NA
UHGV-1468536_23	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-1468536_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-1468536_24	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1468536_24	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1468536_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1468536_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1468536_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1468536_25	PHROG	phrog_10250	NA	unknown function
UHGV-1468536_25	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-1468536_25	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1468536_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1468536_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1468536_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1468536_25	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1468536_26	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-1468536_26	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1468536_26	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-1468536_26	Structural annotation	PF13542	NA	NA
UHGV-1468536_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1468536_27	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1468536_32	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1468536_32	UniRef90	UniRef90_A0A845R569	Methyltransferase domain-containing protein	NA
UHGV-1468536_32	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-1468536_32	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1468536_32	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1468536_32	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-1468536_32	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-1468536_33	PHROG	phrog_31463	NA	unknown function
UHGV-1468536_33	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-1468536_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1468536_35	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1468536_35	UniRef90	UniRef90_A0A316RHT6	Site-specific DNA-methyltransferase	NA
UHGV-1468536_35	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-1468536_35	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1468536_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1468536_35	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1468536_36	PHROG	phrog_3301	pyrophosphatase	other
UHGV-1468536_36	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1468536_36	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1468536_36	Structural annotation	COG1694	NA	NA
UHGV-1468536_38	PHROG	phrog_824	NA	unknown function
UHGV-1468536_38	UniRef90	UniRef90_A0A2V2FQB3	VRR-NUC domain-containing protein	NA
UHGV-1468536_38	eggNOG-mapper	641107.CDLVIII_1315	VRR-NUC domain	NA
UHGV-1468536_38	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1468536_39	PHROG	phrog_15768	NA	unknown function
UHGV-1468536_39	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-1468536_39	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-1468536_39	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-1468536_40	Structural annotation	PF19157	NA	NA
UHGV-1468536_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1468536_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1468536_41	UniRef90	UniRef90_A0A2V2FMD6	Single-stranded DNA-binding protein	NA
UHGV-1468536_41	eggNOG-mapper	445971.ANASTE_01949	Single-stranded DNA-binding protein	NA
UHGV-1468536_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1468536_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1468536_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1468536_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1468536_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1468536_42	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1468536_42	UniRef90	UniRef90_A0A2V2FQC1	HNHc domain-containing protein	NA
UHGV-1468536_42	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-1468536_42	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-1468536_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1468536_43	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-1468536_43	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-1468536_43	Structural annotation	PF05772	NA	NA
UHGV-1468536_44	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1468536_44	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1468536_44	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1468536_44	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-1468536_45	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1468536_45	UniRef90	UniRef90_UPI00084D812A	host-nuclease inhibitor Gam family protein	NA
UHGV-1468536_45	eggNOG-mapper	697281.Mahau_0089	Bacteriophage Mu Gam like protein	NA
UHGV-1468536_45	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-1468536_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1468536_47	PHROG	phrog_95	integrase	integration and excision
UHGV-1468536_47	UniRef90	UniRef90_A0A1V4W1T1	Transposon gamma-delta resolvase	NA
UHGV-1468536_47	eggNOG-mapper	1160721.RBI_I00224	NA	NA
UHGV-1468536_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1468536_47	Pfam	PF07508	Recombinase	Recombinase
UHGV-1468536_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1468536_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1468536_47	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-1468536_48	UniRef90	UniRef90_A0A6N3UXW6	Recombinase domain-containing protein	NA
UHGV-1468536_48	eggNOG-mapper	1235797.C816_01294	Recombinase	NA
UHGV-1468536_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1468536_49	UniRef90	UniRef90_A0A3A6JJB4	Mutator family transposase (Fragment)	NA
UHGV-1468536_49	eggNOG-mapper	1123313.ATUT01000006_gene1334	COG COG3328 Transposase and inactivated derivatives	NA
UHGV-1468536_49	COG	COG3328	Transposase (or an inactivated derivative)	NA