UHGV-1468579

Genome information

vOTU vOTU-020447

Genome length 40,705 bps

CDS count 50

Completeness 89.48% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-1468579
vOTU ID	vOTU-020447
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0272174
BioSample	SAMN00043931
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.61
Jumbo phage	No

Genome content
Genome length	40,705 bps
GC content	37.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.82%
Average CDS length	740.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1468579_3	PHROG	phrog_22695	NA	unknown function
UHGV-1468579_3	eggNOG-mapper	879308.HMPREF9130_1214	NA	NA
UHGV-1468579_4	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1468579_4	UniRef90	UniRef90_UPI001D158B4A	NA	NA
UHGV-1468579_4	eggNOG-mapper	1219626.HMPREF1639_07080	NA	NA
UHGV-1468579_4	Pfam	PF10926	NA	DUF2800
UHGV-1468579_4	COG	COG2887	RecB family exonuclease	NA
UHGV-1468579_4	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1468579_5	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1468579_5	UniRef90	UniRef90_UPI001D156B4E	NA	NA
UHGV-1468579_5	eggNOG-mapper	1219626.HMPREF1639_07085	NA	NA
UHGV-1468579_5	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1468579_5	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1468579_7	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1468579_7	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1468579_7	UniRef90	UniRef90_A0A095XNS9	XRE family transcriptional regulator	NA
UHGV-1468579_7	eggNOG-mapper	1219626.HMPREF1639_07095	DNA polymerase A domain	NA
UHGV-1468579_7	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1468579_7	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1468579_7	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1468579_8	PHROG	phrog_236	nucleotide kinase	other
UHGV-1468579_8	UniRef90	UniRef90_Q7Y4J5	Gp29	NA
UHGV-1468579_8	eggNOG-mapper	1219626.HMPREF1639_07100	NA	NA
UHGV-1468579_8	Pfam	PF11753	NA	DUF3310
UHGV-1468579_10	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-1468579_11	Structural annotation	PF10694	NA	NA
UHGV-1468579_14	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1468579_14	UniRef90	UniRef90_A0A095YYB5	Virulence-associated protein E	NA
UHGV-1468579_14	eggNOG-mapper	1219626.HMPREF1639_07120	Virulence-associated protein E	NA
UHGV-1468579_14	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1468579_14	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1468579_14	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-1468579_15	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1468579_15	UniRef90	UniRef90_UPI00056CA7F9	VRR-NUC domain-containing protein	NA
UHGV-1468579_15	eggNOG-mapper	706434.HMPREF9429_00391	VRR_NUC	NA
UHGV-1468579_15	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-1468579_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1468579_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1468579_16	UniRef90	UniRef90_A0A095XNT2	DEAD/DEAH box helicase	NA
UHGV-1468579_16	eggNOG-mapper	1219626.HMPREF1639_07130	SNF2 family N-terminal domain	NA
UHGV-1468579_16	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1468579_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1468579_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1468579_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1468579_16	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1468579_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1468579_17	UniRef90	UniRef90_UPI001121E44A	NA	NA
UHGV-1468579_17	eggNOG-mapper	1219626.HMPREF1639_07135	sigma factor activity	NA
UHGV-1468579_17	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1468579_17	Structural annotation	PF07374, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-1468579_19	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1468579_19	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1468579_19	UniRef90	UniRef90_A0A4P5P4X6	PAPS_reduct domain-containing protein	NA
UHGV-1468579_19	eggNOG-mapper	1408428.JNJP01000066_gene1733	sulfate reduction	NA
UHGV-1468579_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1468579_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1468579_19	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-1468579_20	PHROG	phrog_9353	NA	unknown function
UHGV-1468579_20	UniRef90	UniRef90_UPI0009D69075	ParB N-terminal domain-containing protein	NA
UHGV-1468579_20	eggNOG-mapper	1408428.JNJP01000066_gene1732	DNA binding	NA
UHGV-1468579_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1468579_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1468579_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1468579_20	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1468579_21	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1468579_21	UniRef90	UniRef90_UPI001D05A70C	transposase	NA
UHGV-1468579_21	eggNOG-mapper	1035196.HMPREF9998_01273	HNH endonuclease	NA
UHGV-1468579_21	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-1468579_21	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1468579_21	Structural annotation	PF07141	NA	NA
UHGV-1468579_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1468579_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1468579_22	UniRef90	UniRef90_A0A095YYC0	Terminase	NA
UHGV-1468579_22	eggNOG-mapper	1219626.HMPREF1639_07150	Phage terminase, large subunit, PBSX family	NA
UHGV-1468579_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1468579_22	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1468579_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-1468579_23	UniRef90	UniRef90_UPI000AF926AF	capsid protein	NA
UHGV-1468579_23	eggNOG-mapper	1262449.CP6013_3191	NA	NA
UHGV-1468579_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1468579_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1468579_24	UniRef90	UniRef90_A0A1H8KFS8	Phage minor capsid protein 2	NA
UHGV-1468579_24	eggNOG-mapper	1391647.AVSV01000003_gene1804	Phage minor capsid protein 2	NA
UHGV-1468579_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1468579_24	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1468579_24	COG	COG2369	NA	NA
UHGV-1468579_24	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-1468579_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1468579_26	UniRef90	UniRef90_UPI00068CC728	phage scaffolding protein	NA
UHGV-1468579_26	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-1468579_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1468579_27	PHROG	phrog_422	major head protein	head and packaging
UHGV-1468579_27	UniRef90	UniRef90_A0A095ZSI9	Capsid protein	NA
UHGV-1468579_27	eggNOG-mapper	1219626.HMPREF1639_07180	NA	NA
UHGV-1468579_27	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1468579_28	PHROG	phrog_1378	NA	unknown function
UHGV-1468579_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1468579_29	eggNOG-mapper	1219626.HMPREF1639_07190	NA	NA
UHGV-1468579_30	PHROG	phrog_8710	NA	unknown function
UHGV-1468579_30	eggNOG-mapper	1219626.HMPREF1639_07195	NA	NA
UHGV-1468579_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1468579_31	UniRef90	UniRef90_UPI001C0FDF90	minor capsid protein	NA
UHGV-1468579_31	eggNOG-mapper	1219626.HMPREF1639_07200	Minor capsid protein	NA
UHGV-1468579_32	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1468579_32	UniRef90	UniRef90_UPI001C10AADB	minor capsid protein	NA
UHGV-1468579_32	eggNOG-mapper	1219626.HMPREF1639_07205	NA	NA
UHGV-1468579_32	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1468579_32	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1468579_33	PHROG	phrog_820	major tail protein	tail
UHGV-1468579_33	eggNOG-mapper	1219626.HMPREF1639_07210	domain, Protein	NA
UHGV-1468579_33	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1468579_33	COG	COG5492	NA	NA
UHGV-1468579_33	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1468579_34	PHROG	phrog_8300	NA	unknown function
UHGV-1468579_34	eggNOG-mapper	1280692.AUJL01000027_gene2153	NA	NA
UHGV-1468579_35	PHROG	phrog_8355	NA	unknown function
UHGV-1468579_35	UniRef90	UniRef90_A0A1H8JXL5	Bacteriophage Gp15 protein	NA
UHGV-1468579_35	eggNOG-mapper	1219626.HMPREF1639_07220	NA	NA
UHGV-1468579_35	Structural annotation	PF06854	NA	NA
UHGV-1468579_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1468579_36	UniRef90	UniRef90_A0A1H8JY90	Phage-related protein	NA
UHGV-1468579_36	eggNOG-mapper	1219626.HMPREF1639_07225	SLT domain	NA
UHGV-1468579_36	COG	COG1511	NA	NA
UHGV-1468579_36	Structural annotation	PF09325	NA	NA
UHGV-1468579_37	PHROG	phrog_1194	NA	unknown function
UHGV-1468579_37	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-1468579_37	eggNOG-mapper	1219626.HMPREF1639_07230	NA	NA
UHGV-1468579_37	Pfam	PF20458	NA	DUF6711
UHGV-1468579_37	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1468579_38	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-1468579_38	UniRef90	UniRef90_A0A1H8JYF0	Chaperone of endosialidase	NA
UHGV-1468579_38	eggNOG-mapper	1219626.HMPREF1639_07235	NA	NA
UHGV-1468579_38	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1468579_39	PHROG	phrog_34633	NA	unknown function
UHGV-1468579_39	UniRef90	UniRef90_UPI00040481BA	RES family NAD+ phosphorylase	NA
UHGV-1468579_39	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-1468579_39	Structural annotation	PF14545, PF18463, NF010435, COG5513	NA	NA
UHGV-1468579_40	PHROG	phrog_8309	NA	unknown function
UHGV-1468579_40	eggNOG-mapper	596315.HMPREF0634_0229	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1468579_40	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1468579_40	Structural annotation	PF17900	NA	NA
UHGV-1468579_41	PHROG	phrog_33623	NA	unknown function
UHGV-1468579_43	PHROG	phrog_199	holin	lysis
UHGV-1468579_43	UniRef90	UniRef90_UPI0016278BB2	phage holin family protein	NA
UHGV-1468579_43	eggNOG-mapper	596329.HMPREF0631_1396	Bacteriophage holin family	NA
UHGV-1468579_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1468579_43	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1468579_43	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1468579_44	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1468579_44	PHROG	phrog_435	endolysin	lysis
UHGV-1468579_44	UniRef90	UniRef90_UPI001A9A57FE	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1468579_44	eggNOG-mapper	1204534.J9QE22_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1468579_44	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1468579_44	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1468579_44	Structural annotation	PF01520, PF19127, MF_00562, TIGR02883, TIGR04035, COG0860, COG5263	NA	NA
UHGV-1468579_46	PHROG	phrog_2329	NA	unknown function
UHGV-1468579_46	eggNOG-mapper	1151292.QEW_0754	NA	NA
UHGV-1468579_48	KOfam	K14059	int; integrase	NA
UHGV-1468579_48	PHROG	phrog_1	integrase	integration and excision
UHGV-1468579_48	UniRef90	UniRef90_R5JI49	Integrase	NA
UHGV-1468579_48	eggNOG-mapper	1219626.HMPREF1639_07245	Phage integrase family	NA
UHGV-1468579_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1468579_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1468579_48	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1468579_49	PHROG	phrog_3845	NA	unknown function
UHGV-1468579_49	eggNOG-mapper	86416.Clopa_0586	NA	NA
UHGV-1468579_49	Structural annotation	PF02701	NA	NA
UHGV-1468579_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1468579_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1468579_50	UniRef90	UniRef90_UPI001896DDC1	XRE family transcriptional regulator	NA
UHGV-1468579_50	eggNOG-mapper	1121947.AUHK01000002_gene902	Peptidase S24-like	NA
UHGV-1468579_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1468579_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1468579_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1468579_50	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA