UHGV-1468766

Genome information

Genome length 30,558 bps

CDS count 51

Completeness 78.91% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1468766
vOTU ID	vOTU-025411
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0214451
BioSample	SAMEA3665225
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.27
Jumbo phage	No

Genome content
Genome length	30,558 bps
GC content	50.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.85%
Average CDS length	572.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1468766_2	PHROG	phrog_22529	NA	unknown function
UHGV-1468766_2	UniRef90	UniRef90_A0A3D0DJY9	3D domain-containing protein (Fragment)	NA
UHGV-1468766_2	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-1468766_2	Pfam	PF06725	3D domain	3D
UHGV-1468766_2	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1468766_2	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-1468766_3	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1468766_3	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1468766_3	UniRef90	UniRef90_UPI00164AFBC1	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1468766_3	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1468766_3	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1468766_3	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1468766_3	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1468766_3	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1468766_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1468766_4	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1468766_4	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1468766_4	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1468766_4	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1468766_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1468766_4	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1468766_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1468766_7	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-1468766_10	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1468766_10	UniRef90	UniRef90_D7GNT7	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1468766_10	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1468766_10	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1468766_10	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1468766_10	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-1468766_14	PHROG	phrog_236	nucleotide kinase	other
UHGV-1468766_14	UniRef90	UniRef90_A0A843F518	NA	NA
UHGV-1468766_14	eggNOG-mapper	1118054.CAGW01000095_gene4680	NA	NA
UHGV-1468766_14	Pfam	PF11753	NA	DUF3310
UHGV-1468766_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1468766_17	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1468766_17	Structural annotation	PF05263, TIGR01636, COG1595	NA	NA
UHGV-1468766_19	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1468766_19	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1468766_19	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-1468766_19	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-1468766_19	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1468766_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1468766_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1468766_19	COG	COG0863	DNA modification methylase	NA
UHGV-1468766_19	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1468766_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1468766_21	PHROG	phrog_10250	NA	unknown function
UHGV-1468766_21	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-1468766_21	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1468766_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1468766_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1468766_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1468766_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1468766_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-1468766_23	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-1468766_23	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-1468766_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1468766_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1468766_24	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-1468766_24	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1468766_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1468766_24	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1468766_24	COG	COG2369	NA	NA
UHGV-1468766_24	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-1468766_25	Structural annotation	PF07073, MF_01077, NF037951, COG4568	NA	NA
UHGV-1468766_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1468766_26	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-1468766_26	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-1468766_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1468766_26	Structural annotation	PF06810	NA	NA
UHGV-1468766_27	PHROG	phrog_212	major head protein	head and packaging
UHGV-1468766_27	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-1468766_27	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-1468766_27	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1468766_28	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1468766_28	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-1468766_29	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-1468766_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1468766_30	UniRef90	UniRef90_UPI0006805998	minor capsid protein	NA
UHGV-1468766_30	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1468766_30	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1468766_30	Structural annotation	PF11114	NA	NA
UHGV-1468766_31	PHROG	phrog_3266	tail completion	connector
UHGV-1468766_31	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-1468766_31	Structural annotation	PF20765	NA	NA
UHGV-1468766_32	PHROG	phrog_3099	NA	unknown function
UHGV-1468766_32	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-1468766_32	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-1468766_33	PHROG	phrog_11299	NA	unknown function
UHGV-1468766_33	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-1468766_33	Structural annotation	PF10666	NA	NA
UHGV-1468766_34	PHROG	phrog_706	NA	unknown function
UHGV-1468766_34	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1468766_34	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1468766_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1468766_34	Structural annotation	PF06854	NA	NA
UHGV-1468766_35	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1468766_35	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1468766_35	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-1468766_35	COG	COG5412	Phage-related protein	NA
UHGV-1468766_35	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1468766_36	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1468766_37	PHROG	phrog_6616	tail protein	tail
UHGV-1468766_37	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-1468766_38	KOfam	K19470	C1QTNF1_6_8; complement C1q tumor necrosis factor-related protein 1/6/8	NA
UHGV-1468766_38	PHROG	phrog_6320	tail fiber protein	tail
UHGV-1468766_38	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1468766_41	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-1468766_41	PHROG	phrog_27545	NA	unknown function
UHGV-1468766_41	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-1468766_41	eggNOG-mapper	1226322.HMPREF1545_04028	NA	NA
UHGV-1468766_41	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1468766_41	Structural annotation	PF14600	NA	NA
UHGV-1468766_42	PHROG	phrog_9589	endolysin	lysis
UHGV-1468766_42	UniRef90	UniRef90_A0A843FKE1	CHAP domain-containing protein	NA
UHGV-1468766_42	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-1468766_42	Pfam	PF05257	CHAP domain	CHAP
UHGV-1468766_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1468766_42	COG	COG3942	Surface antigen	NA
UHGV-1468766_42	Structural annotation	PF01471, PF06940, TIGR02594, NF038080, COG3942	NA	NA
UHGV-1468766_43	PHROG	phrog_199	holin	lysis
UHGV-1468766_43	UniRef90	UniRef90_R5CV03	Toxin secretion/phage lysis holin	NA
UHGV-1468766_43	eggNOG-mapper	1121344.JHZO01000006_gene1781	toxin secretion phage lysis holin	NA
UHGV-1468766_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1468766_43	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1468766_43	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1468766_43	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1468766_46	PHROG	phrog_22984	NA	unknown function
UHGV-1468766_47	PHROG	phrog_16490	NA	unknown function
UHGV-1468766_48	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1468766_50	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-1468766_50	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1468766_51	UniRef90	UniRef90_R5CXL5	Acetyltransferase GNAT family	NA
UHGV-1468766_51	eggNOG-mapper	552398.HMPREF0866_00877	Acetyltransferase (GNAT) domain	NA
UHGV-1468766_51	Pfam	PF13508	Acetyltransferase (GNAT) domain	Acetyltransf_7
UHGV-1468766_51	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA