UHGV-1468947

Genome information

vOTU vOTU-019948

Genome length 30,717 bps

CDS count 45

Completeness 79.85% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-1468947
vOTU ID	vOTU-019948
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0215327
BioSample	SAMEA2580048
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.53
Jumbo phage	No

Genome content
Genome length	30,717 bps
GC content	32.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.33%
Average CDS length	619.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1468947_1	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1468947_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1468947_1	UniRef90	UniRef90_A0A381ISA7	Helix-turn-helix domain-containing protein	NA
UHGV-1468947_1	eggNOG-mapper	1235798.C817_04893	Helix-turn-helix XRE-family like proteins	NA
UHGV-1468947_1	PADLOC	Control_protein_00002	control protein	RM
UHGV-1468947_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1468947_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1468947_1	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1468947_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1468947_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1468947_2	UniRef90	UniRef90_UPI0018C70AC5	helix-turn-helix domain-containing protein	NA
UHGV-1468947_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1468947_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1468947_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1468947_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1468947_4	UniRef90	UniRef90_UPI001C0EF04B	phage antirepressor KilAC domain-containing protein	NA
UHGV-1468947_4	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-1468947_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1468947_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1468947_4	COG	COG3617	Prophage antirepressor	NA
UHGV-1468947_4	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1468947_14	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1468947_14	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1468947_14	UniRef90	UniRef90_A0A6B4V6X9	NA	NA
UHGV-1468947_14	eggNOG-mapper	536233.CLO_1799	nuclear chromosome segregation	NA
UHGV-1468947_14	Pfam	PF13476	AAA domain	AAA_23
UHGV-1468947_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1468947_14	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1468947_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1468947_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1468947_15	UniRef90	UniRef90_K6U4H1	Recombinase, phage RecT family	NA
UHGV-1468947_15	eggNOG-mapper	1196322.A370_02072	RecT family	NA
UHGV-1468947_15	Pfam	PF03837	RecT family	RecT
UHGV-1468947_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1468947_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1468947_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1468947_16	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1468947_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1468947_16	UniRef90	UniRef90_A0A6B4JP99	MBL fold metallo-hydrolase	NA
UHGV-1468947_16	eggNOG-mapper	536233.CLO_1801	Metallo-beta-lactamase superfamily	NA
UHGV-1468947_16	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1468947_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1468947_16	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1468947_17	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1468947_17	UniRef90	UniRef90_A0A174F2L9	NA	NA
UHGV-1468947_17	eggNOG-mapper	999411.HMPREF1092_00892	DnaD domain protein	NA
UHGV-1468947_17	Pfam	PF11638	DnaA N-terminal domain	DnaA_N
UHGV-1468947_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1468947_17	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-1468947_18	PHROG	phrog_98	NA	unknown function
UHGV-1468947_18	UniRef90	UniRef90_A0A7M2B1N5	YopX domain-containing protein	NA
UHGV-1468947_18	eggNOG-mapper	1567011.A0A0A7RWK2_9VIRU	YopX protein	NA
UHGV-1468947_18	Pfam	PF09643	YopX protein	YopX
UHGV-1468947_18	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1468947_18	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1468947_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1468947_19	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-1468947_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1468947_19	Structural annotation	PF01507, MF_00064, TIGR02057, COG0175	NA	NA
UHGV-1468947_21	PHROG	phrog_5164	NA	unknown function
UHGV-1468947_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1468947_22	UniRef90	UniRef90_A0A348ZBT0	RNA_pol_sigma70 domain-containing protein	NA
UHGV-1468947_22	eggNOG-mapper	1121289.JHVL01000007_gene2767	sigma factor activity	NA
UHGV-1468947_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1468947_22	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-1468947_23	PHROG	phrog_10934	NA	unknown function
UHGV-1468947_23	UniRef90	UniRef90_Q7Y4M2	Gp2	NA
UHGV-1468947_23	eggNOG-mapper	157924.Q7Y4M2_9CAUD	NA	NA
UHGV-1468947_24	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1468947_24	UniRef90	UniRef90_A0A1I3PZ25	DNA-packaging protein gp3	NA
UHGV-1468947_24	eggNOG-mapper	536233.CLO_1560	DNA-packaging protein gp3	NA
UHGV-1468947_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1468947_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1468947_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1468947_25	UniRef90	UniRef90_UPI00189AA0BC	PBSX family phage terminase large subunit	NA
UHGV-1468947_25	eggNOG-mapper	1499683.CCFF01000005_gene64	Phage terminase, large subunit, PBSX family	NA
UHGV-1468947_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1468947_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1468947_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1468947_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1468947_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1468947_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-1468947_26	UniRef90	UniRef90_A0A6N3FG53	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1468947_26	eggNOG-mapper	1499683.CCFF01000017_gene2144	portal protein, SPP1 Gp6-like	NA
UHGV-1468947_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1468947_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1468947_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1468947_27	UniRef90	UniRef90_A0A1C6CU99	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-1468947_27	eggNOG-mapper	1499683.CCFF01000017_gene2145	Phage Mu protein F like protein	NA
UHGV-1468947_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1468947_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1468947_27	COG	COG2369	NA	NA
UHGV-1468947_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1468947_28	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1468947_28	UniRef90	UniRef90_UPI00082CC29D	NA	NA
UHGV-1468947_28	eggNOG-mapper	1499683.CCFF01000017_gene2146	NA	NA
UHGV-1468947_28	Pfam	PF14265	NA	DUF4355
UHGV-1468947_28	Structural annotation	PF14265	NA	NA
UHGV-1468947_29	PHROG	phrog_267	major head protein	head and packaging
UHGV-1468947_29	UniRef90	UniRef90_A0A7V8IA85	Phage coat protein gp6	NA
UHGV-1468947_29	eggNOG-mapper	1321778.HMPREF1982_03550	P22 coat protein-protein 5 domain protein	NA
UHGV-1468947_29	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1468947_31	eggNOG-mapper	1499683.CCFF01000017_gene2149	NA	NA
UHGV-1468947_31	Pfam	PF10429	Nuclear pore RNA shuttling protein Mtr2	Mtr2
UHGV-1468947_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1468947_32	UniRef90	UniRef90_UPI000C06B6F1	HK97 gp10 family phage protein	NA
UHGV-1468947_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1468947_32	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1468947_33	Structural annotation	PF20765	NA	NA
UHGV-1468947_34	PHROG	phrog_885	major tail protein	tail
UHGV-1468947_34	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1468947_35	PHROG	phrog_1021	NA	unknown function
UHGV-1468947_37	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1468947_37	UniRef90	UniRef90_A0A6B0DZQ8	PhageMin_Tail domain-containing protein	NA
UHGV-1468947_37	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-1468947_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1468947_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1468947_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1468947_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1468947_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1468947_38	UniRef90	UniRef90_A0A1C6KY20	Phage-related protein	NA
UHGV-1468947_38	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-1468947_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1468947_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-1468947_38	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1468947_39	PHROG	phrog_7043	tail protein	tail
UHGV-1468947_39	UniRef90	UniRef90_UPI0011781BA0	phage tail protein	NA
UHGV-1468947_39	eggNOG-mapper	573061.Clocel_3531	Phage minor structural protein	NA
UHGV-1468947_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1468947_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1468947_39	COG	COG4926	Phage-related protein	NA
UHGV-1468947_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1468947_40	PHROG	phrog_28838	NA	unknown function
UHGV-1468947_40	eggNOG-mapper	556261.HMPREF0240_03316	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1468947_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1468947_41	PHROG	phrog_1863	NA	unknown function
UHGV-1468947_41	eggNOG-mapper	632245.CLP_2896	NA	NA
UHGV-1468947_42	PHROG	phrog_1129	holin	lysis
UHGV-1468947_42	UniRef90	UniRef90_A0A0B5QC63	Holin	NA
UHGV-1468947_42	eggNOG-mapper	931276.Cspa_c36300	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1468947_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1468947_42	Structural annotation	PF16079	NA	NA
UHGV-1468947_43	KOfam	K07273	acm; lysozyme	NA
UHGV-1468947_43	PHROG	phrog_6219	endolysin	lysis
UHGV-1468947_43	UniRef90	UniRef90_A0A1I7FA26	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1468947_43	eggNOG-mapper	290402.Cbei_0931	family 25	NA
UHGV-1468947_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1468947_43	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1468947_43	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1468947_44	PHROG	phrog_6775	NA	unknown function
UHGV-1468947_44	AcrCatalog	cluster_37489	NA	NA
UHGV-1468947_45	PHROG	phrog_2329	NA	unknown function
UHGV-1468947_45	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-1468947_45	COG	COG2336	Antitoxin component MazE of the MazEF toxin-antitoxin module	NA