UHGV-1470078

Genome information

Genome length 55,103 bps

CDS count 64

Completeness 91.69% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-1470078
vOTU ID	vOTU-011161
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0321853
BioSample	SAMEA2737676
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	34
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.71
Jumbo phage	No

Genome content
Genome length	55,103 bps
GC content	33.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.86%
Average CDS length	793.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1470078_1	PHROG	phrog_4259	NA	unknown function
UHGV-1470078_1	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-1470078_1	eggNOG-mapper	742740.HMPREF9474_02276	NA	NA
UHGV-1470078_2	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1470078_2	eggNOG-mapper	742733.HMPREF9469_05036	NA	NA
UHGV-1470078_3	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1470078_3	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1470078_3	UniRef90	UniRef90_UPI0018AB4B38	SGNH/GDSL hydrolase family protein	NA
UHGV-1470078_3	eggNOG-mapper	1414720.CBYM010000002_gene558	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1470078_3	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1470078_3	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1470078_3	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1470078_3	Structural annotation	PF10651, PF16255, COG3470	NA	NA
UHGV-1470078_4	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-1470078_4	UniRef90	UniRef90_A0A6B9JBW4	Head-to-tail adaptor	NA
UHGV-1470078_4	eggNOG-mapper	428125.CLOLEP_01407	NA	NA
UHGV-1470078_5	PHROG	phrog_7021	NA	unknown function
UHGV-1470078_5	eggNOG-mapper	411460.RUMTOR_01350	NA	NA
UHGV-1470078_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1470078_6	UniRef90	UniRef90_A0A7X5ECI8	Terminase	NA
UHGV-1470078_6	eggNOG-mapper	428125.CLOLEP_01409	Phage Terminase	NA
UHGV-1470078_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1470078_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1470078_6	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1470078_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-1470078_7	UniRef90	UniRef90_A0A7V7AAV0	Phage portal protein	NA
UHGV-1470078_7	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-1470078_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1470078_7	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1470078_8	KOfam	K06904	NA	NA
UHGV-1470078_8	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-1470078_8	UniRef90	UniRef90_UPI001967B1BC	phage major capsid protein	NA
UHGV-1470078_8	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-1470078_8	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1470078_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1470078_8	Structural annotation	PF05065, PF04586, MF_04119, TIGR01554, TIGR01543, COG4653, COG3740	NA	NA
UHGV-1470078_9	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-1470078_9	UniRef90	UniRef90_A0A1Q9YDU7	Phage capsid protein	NA
UHGV-1470078_9	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-1470078_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1470078_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1470078_9	Structural annotation	PF06673, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1470078_10	PHROG	phrog_4270	NA	unknown function
UHGV-1470078_10	eggNOG-mapper	428125.CLOLEP_01413	NA	NA
UHGV-1470078_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1470078_11	UniRef90	UniRef90_D4P7D8	Structural protein	NA
UHGV-1470078_11	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-1470078_11	Structural annotation	PF20765	NA	NA
UHGV-1470078_12	PHROG	phrog_2645	major tail protein	tail
UHGV-1470078_12	UniRef90	UniRef90_A0A644ZQB8	Big_5 domain-containing protein	NA
UHGV-1470078_12	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-1470078_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1470078_13	PHROG	phrog_4282	NA	unknown function
UHGV-1470078_13	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-1470078_14	PHROG	phrog_4338	NA	unknown function
UHGV-1470078_14	eggNOG-mapper	1537917.JU82_06570	NA	NA
UHGV-1470078_15	UniRef90	UniRef90_A0A373NV95	HK97 gp10 family phage protein	NA
UHGV-1470078_15	eggNOG-mapper	742740.HMPREF9474_02263	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1470078_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1470078_15	Structural annotation	TIGR01725	NA	NA
UHGV-1470078_16	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-1470078_16	UniRef90	UniRef90_A0A173Z2Q0	Phage-related protein	NA
UHGV-1470078_16	eggNOG-mapper	742733.HMPREF9469_05020	phage tail tape measure protein	NA
UHGV-1470078_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1470078_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1470078_16	COG	COG5412	Phage-related protein	NA
UHGV-1470078_16	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1470078_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1470078_17	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1470078_17	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-1470078_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1470078_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1470078_18	UniRef90	UniRef90_UPI0018AACC41	phage tail protein	NA
UHGV-1470078_18	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1470078_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1470078_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1470078_18	COG	COG4926	Phage-related protein	NA
UHGV-1470078_18	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-1470078_19	KOfam	K01023	assT; arylsulfate sulfotransferase [EC:2.8.2.22]	NA
UHGV-1470078_19	PHROG	phrog_21231	virion structural protein	head and packaging
UHGV-1470078_19	eggNOG-mapper	1151292.QEW_2855	Arylsulfotransferase (ASST)	NA
UHGV-1470078_19	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1470078_19	Pfam	PF05935	Arylsulfotransferase (ASST)	Arylsulfotrans
UHGV-1470078_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1470078_22	PHROG	phrog_435	endolysin	lysis
UHGV-1470078_22	UniRef90	UniRef90_R4KQ60	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1470078_22	eggNOG-mapper	767817.Desgi_4433	N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family	NA
UHGV-1470078_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1470078_22	Pfam	PF05036	SPOR domain	SPOR
UHGV-1470078_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1470078_22	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1470078_23	UniRef90	UniRef90_A0A1C6JBW5	Small integral membrane protein	NA
UHGV-1470078_23	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1470078_24	PHROG	phrog_15866	NA	unknown function
UHGV-1470078_24	eggNOG-mapper	742740.HMPREF9474_02324	NA	NA
UHGV-1470078_27	PHROG	phrog_19711	NA	unknown function
UHGV-1470078_29	PHROG	phrog_2152	NA	unknown function
UHGV-1470078_29	UniRef90	UniRef90_UPI001D065195	NA	NA
UHGV-1470078_29	eggNOG-mapper	665956.HMPREF1032_00634	NA	NA
UHGV-1470078_29	Pfam	PF19880	NA	DUF6353
UHGV-1470078_29	Structural annotation	PF19880	NA	NA
UHGV-1470078_31	PHROG	phrog_4079	NA	unknown function
UHGV-1470078_31	eggNOG-mapper	665950.HMPREF1025_01947	NA	NA
UHGV-1470078_32	PHROG	phrog_236	nucleotide kinase	other
UHGV-1470078_32	UniRef90	UniRef90_A0A4D6DT77	NA	NA
UHGV-1470078_32	eggNOG-mapper	742740.HMPREF9474_02311	NA	NA
UHGV-1470078_32	Pfam	PF11753	NA	DUF3310
UHGV-1470078_32	Structural annotation	PF18300, MF_01549, NF003076	NA	NA
UHGV-1470078_33	PHROG	phrog_2152	NA	unknown function
UHGV-1470078_33	UniRef90	UniRef90_A0A649V6N1	Membrane protein	NA
UHGV-1470078_33	eggNOG-mapper	691965.D4P7I0_9CAUD	NA	NA
UHGV-1470078_33	Pfam	PF19880	NA	DUF6353
UHGV-1470078_33	Structural annotation	PF19880	NA	NA
UHGV-1470078_34	PHROG	phrog_4695	NA	unknown function
UHGV-1470078_34	eggNOG-mapper	411460.RUMTOR_02032	NA	NA
UHGV-1470078_35	PHROG	phrog_4678	NA	unknown function
UHGV-1470078_35	eggNOG-mapper	665950.HMPREF1025_01954	NA	NA
UHGV-1470078_36	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1470078_36	UniRef90	UniRef90_UPI00164B6B51	NA	NA
UHGV-1470078_36	eggNOG-mapper	742740.HMPREF9474_02303	NA	NA
UHGV-1470078_36	Pfam	PF19263	NA	DUF5906
UHGV-1470078_36	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1470078_36	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA
UHGV-1470078_38	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1470078_38	eggNOG-mapper	411460.RUMTOR_01384	NA	NA
UHGV-1470078_38	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-1470078_39	PHROG	phrog_24386	NA	unknown function
UHGV-1470078_39	eggNOG-mapper	742740.HMPREF9474_02291	phosphatase activity	NA
UHGV-1470078_39	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-1470078_40	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1470078_40	UniRef90	UniRef90_UPI001D08DE3D	DEAD/DEAH box helicase family protein	NA
UHGV-1470078_40	eggNOG-mapper	665956.HMPREF1032_00650	Helicase conserved C-terminal domain	NA
UHGV-1470078_40	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1470078_40	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-1470078_41	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1470078_41	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1470078_41	UniRef90	UniRef90_UPI00189D1071	dUTP pyrophosphatase	NA
UHGV-1470078_41	eggNOG-mapper	1050201.KB913034_gene1572	dUTPase	NA
UHGV-1470078_41	Pfam	PF00692	dUTPase	dUTPase
UHGV-1470078_41	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1470078_41	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1470078_42	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-1470078_42	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-1470078_42	UniRef90	UniRef90_A0A352MV64	Bifunctional protein FolD	NA
UHGV-1470078_42	eggNOG-mapper	1002809.SSIL_1698	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-1470078_42	Pfam	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	THF_DHG_CYH
UHGV-1470078_42	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-1470078_42	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-1470078_42	Structural annotation	PF02882, PF00763, MF_01576, NF010775, COG0190	NA	NA
UHGV-1470078_43	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1470078_43	eggNOG-mapper	1147137.I1TJZ8_9CAUD	ligase activity	NA
UHGV-1470078_44	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-1470078_44	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-1470078_44	UniRef90	UniRef90_R6YAY9	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1470078_44	eggNOG-mapper	1121333.JMLH01000001_gene1944	NA	NA
UHGV-1470078_44	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-1470078_44	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-1470078_44	NCBIFam	NF006732.0	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1470078_44	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1470078_44	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-1470078_45	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-1470078_45	PHROG	phrog_626	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-1470078_45	UniRef90	UniRef90_A0A645D7A4	Anaerobic ribonucleoside-triphosphate reductase-activating protein	NA
UHGV-1470078_45	eggNOG-mapper	1414720.CBYM010000058_gene26	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	NA
UHGV-1470078_45	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-1470078_45	NCBIFam	TIGR02491.1	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-1470078_45	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-1470078_45	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-1470078_51	PHROG	phrog_25820	endolysin	lysis
UHGV-1470078_51	UniRef90	UniRef90_A0A645E7Y3	LYZ2 domain-containing protein	NA
UHGV-1470078_51	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1470078_51	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1470078_51	Structural annotation	PF01832, NF009354, COG4193	NA	NA
UHGV-1470078_55	PHROG	phrog_6721	NA	unknown function
UHGV-1470078_55	eggNOG-mapper	478749.BRYFOR_08540	NA	NA
UHGV-1470078_55	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1470078_56	UniRef90	UniRef90_UPI000C077448	metallophosphoesterase family protein	NA
UHGV-1470078_56	Pfam	PF12850	Calcineurin-like phosphoesterase superfamily domain	Metallophos_2
UHGV-1470078_61	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-1470078_61	Structural annotation	PF01870, COG1591	NA	NA
UHGV-1470078_62	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1470078_62	UniRef90	UniRef90_A0A3A9IQR6	NA	NA
UHGV-1470078_62	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-1470078_62	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1470078_63	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1470078_63	UniRef90	UniRef90_A0A3C1XCS7	Phage tail protein (Fragment)	NA
UHGV-1470078_63	eggNOG-mapper	742733.HMPREF9469_05039	NA	NA
UHGV-1470078_63	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-1470078_63	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1470078_63	Structural annotation	PF05183	NA	NA
UHGV-1470078_64	PHROG	phrog_4303	NA	unknown function
UHGV-1470078_64	eggNOG-mapper	411460.RUMTOR_01355	NA	NA