UHGV-1470980

Genome information

Genome length 30,624 bps

CDS count 55

Completeness 56.21% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-1470980
vOTU ID	vOTU-025417
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0214811
BioSample	SAMEA2042923
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.56
Jumbo phage	No

Genome content
Genome length	30,624 bps
GC content	34.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.21%
Average CDS length	527.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1470980_2	KOfam	K02341	holB; DNA polymerase III subunit delta' [EC:2.7.7.7]	NA
UHGV-1470980_2	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1470980_2	UniRef90	UniRef90_E7DN82	DNA polymerase III gamma-tau subunit	NA
UHGV-1470980_2	eggNOG-mapper	59241.E7DN82_BPDP1	DNA polymerase III, delta subunit	NA
UHGV-1470980_2	Pfam	PF13177	DNA polymerase III, delta subunit	DNA_pol3_delta2
UHGV-1470980_2	Structural annotation	PF13177, MF_04162, NF004047, COG2812	NA	NA
UHGV-1470980_3	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1470980_3	UniRef90	UniRef90_A0A843GQD5	DNA_ligase_aden domain-containing protein	NA
UHGV-1470980_3	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-1470980_4	KOfam	K02340	holA; DNA polymerase III subunit delta [EC:2.7.7.7]	NA
UHGV-1470980_4	PHROG	phrog_20214	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1470980_4	UniRef90	UniRef90_E7DN83	HolA DNA polymerase III subunit delta	NA
UHGV-1470980_4	eggNOG-mapper	59241.E7DN83_BPDP1	NA	NA
UHGV-1470980_4	Pfam	PF21694	DNA polymerase III delta subunit, C-terminal domain	DNA_pol3_delta_C
UHGV-1470980_4	Structural annotation	PF21694, PF06144, MF_01509, NF005134, COG1466	NA	NA
UHGV-1470980_5	PHROG	phrog_16619	minor head protein	head and packaging
UHGV-1470980_6	UniRef90	UniRef90_A0A6L9HTL4	Gln_amidase domain-containing protein	NA
UHGV-1470980_6	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-1470980_9	Pfam	PF19474	NA	DUF6011
UHGV-1470980_9	Structural annotation	PF19474	NA	NA
UHGV-1470980_10	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-1470980_11	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1470980_11	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1470980_11	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-1470980_11	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-1470980_11	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1470980_11	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1470980_11	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1470980_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1470980_12	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1470980_12	UniRef90	UniRef90_A0A6L5T7D2	PBSX family phage terminase large subunit	NA
UHGV-1470980_12	eggNOG-mapper	445972.ANACOL_01839	Phage terminase, large subunit, PBSX family	NA
UHGV-1470980_12	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1470980_12	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1470980_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1470980_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-1470980_12	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1470980_13	PHROG	phrog_1233	NA	unknown function
UHGV-1470980_13	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-1470980_13	Structural annotation	PF13058	NA	NA
UHGV-1470980_14	PHROG	phrog_1220	head protein	head and packaging
UHGV-1470980_14	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-1470980_14	eggNOG-mapper	936375.HMPREF1152_0017	NA	NA
UHGV-1470980_14	Structural annotation	PF20747	NA	NA
UHGV-1470980_15	PHROG	phrog_15594	NA	unknown function
UHGV-1470980_15	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1470980_15	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1470980_17	PHROG	phrog_1197	tail protein	tail
UHGV-1470980_17	UniRef90	UniRef90_UPI001E334981	head fiber protein	NA
UHGV-1470980_17	eggNOG-mapper	1273103.NM10_08089	tail collar domain protein	NA
UHGV-1470980_17	COG	COG4675	Phage tail collar domain	NA
UHGV-1470980_19	PHROG	phrog_443	holin	lysis
UHGV-1470980_19	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-1470980_19	eggNOG-mapper	1321814.HMPREF9089_00942	Putative lactococcus lactis phage r1t holin	NA
UHGV-1470980_19	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1470980_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1470980_20	PHROG	phrog_435	endolysin	lysis
UHGV-1470980_20	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1470980_20	eggNOG-mapper	1392487.JIAD01000001_gene633	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1470980_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1470980_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1470980_20	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1470980_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-1470980_22	UniRef90	UniRef90_A0A6L5T8J5	Phage portal protein	NA
UHGV-1470980_22	eggNOG-mapper	1449050.JNLE01000003_gene3894	NA	NA
UHGV-1470980_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1470980_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1470980_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1470980_23	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-1470980_23	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1470980_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1470980_23	COG	COG2369	NA	NA
UHGV-1470980_23	Structural annotation	PF06152	NA	NA
UHGV-1470980_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1470980_24	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-1470980_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1470980_24	Structural annotation	PF06810	NA	NA
UHGV-1470980_25	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-1470980_25	eggNOG-mapper	903814.ELI_3113	Phage capsid family	NA
UHGV-1470980_25	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1470980_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1470980_25	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1470980_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1470980_28	PHROG	phrog_3366	NA	unknown function
UHGV-1470980_28	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1470980_29	UniRef90	UniRef90_UPI0011DCF08B	minor capsid protein	NA
UHGV-1470980_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1470980_29	Structural annotation	PF11114	NA	NA
UHGV-1470980_30	PHROG	phrog_3266	tail completion	connector
UHGV-1470980_30	Structural annotation	PF12691	NA	NA
UHGV-1470980_31	PHROG	phrog_3099	NA	unknown function
UHGV-1470980_31	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-1470980_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1470980_32	Structural annotation	PF20378	NA	NA
UHGV-1470980_33	PHROG	phrog_706	NA	unknown function
UHGV-1470980_33	UniRef90	UniRef90_UPI00164A5BA4	Gp15 family bacteriophage protein	NA
UHGV-1470980_33	eggNOG-mapper	1121871.AUAT01000035_gene1279	Bacteriophage Gp15 protein	NA
UHGV-1470980_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1470980_33	Structural annotation	PF06854	NA	NA
UHGV-1470980_34	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1470980_34	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-1470980_34	COG	COG5412	Phage-related protein	NA
UHGV-1470980_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1470980_35	UniRef90	UniRef90_UPI001655C860	phage tail family protein	NA
UHGV-1470980_35	eggNOG-mapper	1540257.JQMW01000013_gene730	Phage tail protein	NA
UHGV-1470980_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-1470980_35	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1470980_36	UniRef90	UniRef90_A0A1I1Y2T7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-1470980_36	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1470980_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1470980_37	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-1470980_37	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-1470980_39	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1470980_39	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-1470980_40	PHROG	phrog_21718	NA	unknown function
UHGV-1470980_40	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1470980_42	PHROG	phrog_16490	NA	unknown function
UHGV-1470980_42	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-1470980_43	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1470980_51	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1470980_51	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1470980_51	UniRef90	UniRef90_D9ZNF7	Putative helicase	NA
UHGV-1470980_51	eggNOG-mapper	871584.D9ZNF7_9CAUD	helicase activity	NA
UHGV-1470980_51	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1470980_51	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1470980_51	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1470980_51	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-1470980_54	Structural annotation	PF05777, MF_01186, COG2980	NA	NA
UHGV-1470980_55	PHROG	phrog_6969	NA	unknown function
UHGV-1470980_55	UniRef90	UniRef90_UPI000E4B3C45	helix-turn-helix domain-containing protein	NA
UHGV-1470980_55	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1470980_55	Pfam	PF13730	Helix-turn-helix domain	HTH_36