UHGV-1471452

Genome information

Genome length 30,755 bps

CDS count 45

Completeness 74.19% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-1471452
vOTU ID	vOTU-015117
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0215544
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.53
Jumbo phage	No

Genome content
Genome length	30,755 bps
GC content	44.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.74%
Average CDS length	660.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1471452_1	eggNOG-mapper	592028.GCWU000321_01404	NA	NA
UHGV-1471452_1	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1471452_2	PHROG	phrog_30113	NA	unknown function
UHGV-1471452_2	UniRef90	UniRef90_UPI001C3A2571	NA	NA
UHGV-1471452_2	eggNOG-mapper	1122216.AUHW01000002_gene1800	NA	NA
UHGV-1471452_2	Pfam	PF12686	NA	DUF3800
UHGV-1471452_2	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-1471452_4	PHROG	phrog_25979	NA	unknown function
UHGV-1471452_4	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1471452_5	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-1471452_5	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-1471452_6	PHROG	phrog_5867	endolysin	lysis
UHGV-1471452_6	UniRef90	UniRef90_C9LPB8	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1471452_6	eggNOG-mapper	592028.GCWU000321_01397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1471452_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1471452_6	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1471452_6	Structural annotation	MF_04111	NA	NA
UHGV-1471452_8	UniRef90	UniRef90_A0A6L6TSJ6	Peptidase	NA
UHGV-1471452_8	eggNOG-mapper	484770.UFO1_1718	NA	NA
UHGV-1471452_9	Structural annotation	PF00677	NA	NA
UHGV-1471452_11	PHROG	phrog_33356	NA	unknown function
UHGV-1471452_11	eggNOG-mapper	1111454.HMPREF1250_0267	NA	NA
UHGV-1471452_13	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-1471452_13	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-1471452_13	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-1471452_13	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1471452_13	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-1471452_13	COG	COG1511	NA	NA
UHGV-1471452_13	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-1471452_14	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-1471452_14	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-1471452_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1471452_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1471452_14	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-1471452_15	PHROG	phrog_18	minor tail protein	tail
UHGV-1471452_15	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-1471452_15	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-1471452_15	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1471452_15	COG	COG4672	Phage tail protein	NA
UHGV-1471452_15	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-1471452_16	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-1471452_16	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1471452_17	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1471452_17	UniRef90	UniRef90_UPI000422D822	tape measure protein	NA
UHGV-1471452_17	eggNOG-mapper	1123489.AUAN01000010_gene351	tape measure	NA
UHGV-1471452_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1471452_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1471452_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1471452_18	PHROG	phrog_680	tail length tape measure protein	tail
UHGV-1471452_18	UniRef90	UniRef90_UPI001D09F5D4	NA	NA
UHGV-1471452_18	eggNOG-mapper	1123489.AUAN01000010_gene352	NA	NA
UHGV-1471452_18	Pfam	PF08809	NA	DUF1799
UHGV-1471452_18	Structural annotation	PF08809	NA	NA
UHGV-1471452_19	eggNOG-mapper	888060.HMPREF9081_1542	NA	NA
UHGV-1471452_20	PHROG	phrog_290	minor tail protein	tail
UHGV-1471452_20	UniRef90	UniRef90_UPI00195F5747	phage tail tube protein	NA
UHGV-1471452_20	eggNOG-mapper	888060.HMPREF9081_1545	NA	NA
UHGV-1471452_20	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-1471452_20	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-1471452_21	PHROG	phrog_18864	NA	unknown function
UHGV-1471452_21	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-1471452_21	Structural annotation	PF06141, COG5003	NA	NA
UHGV-1471452_22	PHROG	phrog_19017	NA	unknown function
UHGV-1471452_22	eggNOG-mapper	1123489.AUAN01000010_gene356	NA	NA
UHGV-1471452_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1471452_23	UniRef90	UniRef90_M5AAE1	Tail protein	NA
UHGV-1471452_23	eggNOG-mapper	387092.NIS_0469	Phage virion morphogenesis	NA
UHGV-1471452_23	COG	COG5005	NA	NA
UHGV-1471452_23	Structural annotation	TIGR01725	NA	NA
UHGV-1471452_24	PHROG	phrog_15682	NA	unknown function
UHGV-1471452_24	UniRef90	UniRef90_A0A7C6KAU2	Rho_N domain-containing protein	NA
UHGV-1471452_24	eggNOG-mapper	1294142.CINTURNW_1030	NA	NA
UHGV-1471452_25	PHROG	phrog_212	major head protein	head and packaging
UHGV-1471452_25	UniRef90	UniRef90_A0A7Z0TEG2	Phage capsid protein	NA
UHGV-1471452_25	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-1471452_25	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1471452_26	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-1471452_26	eggNOG-mapper	888060.HMPREF9081_1551	NA	NA
UHGV-1471452_26	Structural annotation	PF06810	NA	NA
UHGV-1471452_27	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1471452_27	UniRef90	UniRef90_S7IX76	Putative inner membrane protein	NA
UHGV-1471452_27	eggNOG-mapper	1273103.NM10_11541	NA	NA
UHGV-1471452_27	Pfam	PF10097	NA	DUF2335
UHGV-1471452_27	COG	COG5346	NA	NA
UHGV-1471452_27	Structural annotation	PF10097, COG5346	NA	NA
UHGV-1471452_30	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1471452_30	UniRef90	UniRef90_R7PPR8	Ntox50 domain-containing protein	NA
UHGV-1471452_30	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-1471452_30	Pfam	PF21814	NA	DUF6883
UHGV-1471452_30	Structural annotation	PF21814	NA	NA
UHGV-1471452_31	PHROG	phrog_145	portal protein	head and packaging
UHGV-1471452_31	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-1471452_31	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-1471452_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1471452_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1471452_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1471452_32	UniRef90	UniRef90_A0A316LP82	PBSX family phage terminase large subunit	NA
UHGV-1471452_32	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-1471452_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1471452_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1471452_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1471452_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-1471452_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1471452_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1471452_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1471452_33	UniRef90	UniRef90_UPI000F8CDB0C	terminase small subunit	NA
UHGV-1471452_33	eggNOG-mapper	883156.HMPREF9282_00945	terminase, small subunit	NA
UHGV-1471452_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1471452_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1471452_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1471452_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1471452_34	eggNOG-mapper	796940.HMPREF9628_00155	NA	NA
UHGV-1471452_34	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1471452_36	PHROG	phrog_1672	NA	unknown function
UHGV-1471452_36	UniRef90	UniRef90_A0A8B6ILJ5	NA	NA
UHGV-1471452_36	eggNOG-mapper	910314.HMPREF9220_1101	NA	NA
UHGV-1471452_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1471452_37	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1471452_37	UniRef90	UniRef90_A0A134CHV4	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1471452_37	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1471452_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1471452_37	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1471452_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1471452_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1471452_38	UniRef90	UniRef90_F2BXW4	Single-stranded DNA-binding protein	NA
UHGV-1471452_38	eggNOG-mapper	888062.HMPREF9083_1032	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1471452_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1471452_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1471452_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1471452_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1471452_38	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-1471452_39	Structural annotation	PF17887	NA	NA
UHGV-1471452_40	PHROG	phrog_9804	NA	unknown function
UHGV-1471452_40	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1471452_41	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1471452_41	eggNOG-mapper	1321778.HMPREF1982_02671	DnaD domain protein	NA
UHGV-1471452_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1471452_41	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-1471452_42	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1471452_42	UniRef90	UniRef90_UPI000788ABF7	NA	NA
UHGV-1471452_42	eggNOG-mapper	936573.HMPREF1147_1315	NA	NA
UHGV-1471452_42	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1471452_43	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1471452_43	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1471452_43	UniRef90	UniRef90_A0A134CHR9	Recombination and repair protein RecT	NA
UHGV-1471452_43	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-1471452_43	Pfam	PF03837	RecT family	RecT
UHGV-1471452_43	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1471452_43	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1471452_43	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1471452_44	Structural annotation	PF17020, MF_01549, TIGR00405, COG1862	NA	NA
UHGV-1471452_45	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1471452_45	UniRef90	UniRef90_R6BBB5	YqaJ viral recombinase family protein	NA
UHGV-1471452_45	eggNOG-mapper	910314.HMPREF9220_1109	YqaJ viral recombinase family protein	NA
UHGV-1471452_45	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1471452_45	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1471452_45	COG	COG5377	Phage-related protein, predicted endonuclease	NA