UHGV-1471792

Genome information

vOTU vOTU-020666

Genome length 30,484 bps

CDS count 49

Completeness 71.51% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-1471792
vOTU ID	vOTU-020666
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0214061
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.16
Jumbo phage	No

Genome content
Genome length	30,484 bps
GC content	56.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	95.37%
Average CDS length	598.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1471792_1	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-1471792_5	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1471792_5	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1471792_5	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-1471792_5	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-1471792_6	PHROG	phrog_398	NA	unknown function
UHGV-1471792_6	UniRef90	UniRef90_UPI00137B6F1E	putative HNHc nuclease	NA
UHGV-1471792_6	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-1471792_6	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1471792_6	Structural annotation	PF16784	NA	NA
UHGV-1471792_8	UniRef90	UniRef90_G9YN41	DNA binding domain, excisionase family	NA
UHGV-1471792_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1471792_8	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1471792_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1471792_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1471792_9	UniRef90	UniRef90_A0A350TKS2	Single-stranded DNA-binding protein	NA
UHGV-1471792_9	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-1471792_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1471792_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1471792_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1471792_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1471792_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1471792_10	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1471792_10	eggNOG-mapper	1122917.KB899659_gene5710	Replication initiation and membrane attachment	NA
UHGV-1471792_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1471792_10	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1471792_11	Structural annotation	PF11417	NA	NA
UHGV-1471792_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1471792_12	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1471792_12	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1471792_12	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-1471792_12	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1471792_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1471792_13	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1471792_13	UniRef90	UniRef90_UPI00082E0CBC	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1471792_13	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-1471792_13	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1471792_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1471792_13	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1471792_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1471792_13	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1471792_15	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1471792_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1471792_15	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-1471792_15	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-1471792_15	PADLOC	MTase_II_00069	Type II methyltransferase	RM
UHGV-1471792_15	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1471792_15	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1471792_15	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1471792_15	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1471792_17	PHROG	phrog_38832	NA	unknown function
UHGV-1471792_17	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1471792_18	PHROG	phrog_25732	NA	unknown function
UHGV-1471792_19	PHROG	phrog_924	NA	unknown function
UHGV-1471792_19	UniRef90	UniRef90_UPI0019214AF7	NA	NA
UHGV-1471792_19	eggNOG-mapper	1316932.MHH_c17560	NA	NA
UHGV-1471792_19	Pfam	PF04448	NA	DUF551
UHGV-1471792_19	Structural annotation	PF04448	NA	NA
UHGV-1471792_21	UniRef90	UniRef90_A0A8J6J3G6	Helix-turn-helix transcriptional regulator	NA
UHGV-1471792_21	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1471792_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1471792_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1471792_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1471792_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1471792_23	UniRef90	UniRef90_A0A8J6MDX5	Helix-turn-helix domain-containing protein	NA
UHGV-1471792_23	eggNOG-mapper	1007096.BAGW01000022_gene2658	transposase activity	NA
UHGV-1471792_23	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1471792_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1471792_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1471792_24	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1471792_24	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1471792_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1471792_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1471792_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1471792_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1471792_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1471792_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1471792_25	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-1471792_25	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1471792_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1471792_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1471792_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1471792_26	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-1471792_26	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1471792_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1471792_26	COG	COG2369	NA	NA
UHGV-1471792_26	Structural annotation	PF06152	NA	NA
UHGV-1471792_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1471792_28	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-1471792_28	AcrCatalog	cluster_74817	NA	NA
UHGV-1471792_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1471792_29	UniRef90	UniRef90_UPI00137B7B46	phage major capsid protein	NA
UHGV-1471792_29	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1471792_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1471792_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1471792_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1471792_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1471792_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1471792_30	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1471792_31	PHROG	phrog_3366	NA	unknown function
UHGV-1471792_31	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1471792_31	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1471792_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1471792_32	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-1471792_32	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1471792_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1471792_32	Structural annotation	PF11114	NA	NA
UHGV-1471792_33	PHROG	phrog_3266	tail completion	connector
UHGV-1471792_33	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1471792_33	Structural annotation	PF12691	NA	NA
UHGV-1471792_34	PHROG	phrog_3099	NA	unknown function
UHGV-1471792_34	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-1471792_34	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-1471792_35	PHROG	phrog_11299	NA	unknown function
UHGV-1471792_35	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1471792_35	Structural annotation	PF10666	NA	NA
UHGV-1471792_36	PHROG	phrog_706	NA	unknown function
UHGV-1471792_36	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1471792_36	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1471792_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1471792_36	Structural annotation	PF06854	NA	NA
UHGV-1471792_38	eggNOG-mapper	411473.RUMCAL_03485	TM2 domain	NA
UHGV-1471792_38	COG	COG2314	NA	NA
UHGV-1471792_38	Structural annotation	PF05154, COG2314	NA	NA
UHGV-1471792_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1471792_39	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-1471792_39	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-1471792_39	COG	COG1511	NA	NA
UHGV-1471792_40	PHROG	phrog_1194	NA	unknown function
UHGV-1471792_40	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-1471792_40	Pfam	PF20458	NA	DUF6711
UHGV-1471792_40	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1471792_41	PHROG	phrog_6616	tail protein	tail
UHGV-1471792_41	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-1471792_41	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-1471792_41	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-1471792_42	PHROG	phrog_1899	NA	unknown function
UHGV-1471792_42	UniRef90	UniRef90_A0A7X5DZH6	Peptidase S74 domain-containing protein	NA
UHGV-1471792_42	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-1471792_44	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-1471792_44	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1471792_44	Structural annotation	PF20622, COG5456	NA	NA
UHGV-1471792_45	PHROG	phrog_13589	NA	unknown function
UHGV-1471792_45	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-1471792_45	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1471792_46	Structural annotation	NF012201	NA	NA
UHGV-1471792_48	PHROG	phrog_4105	NA	unknown function
UHGV-1471792_48	eggNOG-mapper	411460.RUMTOR_01326	NA	NA