UHGV-1471795

Genome information

Genome length 30,812 bps

CDS count 45

Completeness 86.75% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-1471795
vOTU ID	vOTU-018112
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0215843
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.94
Jumbo phage	No

Genome content
Genome length	30,812 bps
GC content	41.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.23%
Average CDS length	636.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1471795_2	Structural annotation	PF11195	NA	NA
UHGV-1471795_7	PHROG	phrog_23707	NA	unknown function
UHGV-1471795_7	UniRef90	UniRef90_UPI00156E595D	alanine racemase	NA
UHGV-1471795_7	eggNOG-mapper	537007.BLAHAN_04222	NA	NA
UHGV-1471795_8	Structural annotation	PF14282	NA	NA
UHGV-1471795_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1471795_9	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-1471795_9	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1471795_11	PHROG	phrog_824	NA	unknown function
UHGV-1471795_11	UniRef90	UniRef90_UPI0015713852	VRR-NUC domain-containing protein	NA
UHGV-1471795_11	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-1471795_11	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1471795_12	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-1471795_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1471795_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1471795_13	UniRef90	UniRef90_A0A412EMG9	ParA family protein	NA
UHGV-1471795_13	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-1471795_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-1471795_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1471795_13	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1471795_15	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1471795_15	PHROG	phrog_15982	NA	unknown function
UHGV-1471795_15	UniRef90	UniRef90_UPI0015702B3C	ParB/RepB/Spo0J family partition protein	NA
UHGV-1471795_15	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-1471795_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1471795_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1471795_15	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1471795_16	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1471795_16	UniRef90	UniRef90_UPI00156F191E	NUMOD4 domain-containing protein	NA
UHGV-1471795_16	eggNOG-mapper	1291050.JAGE01000002_gene3265	NA	NA
UHGV-1471795_16	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1471795_19	PHROG	phrog_625	NA	unknown function
UHGV-1471795_19	UniRef90	UniRef90_A0A7X5CBN4	ASCH domain-containing protein	NA
UHGV-1471795_19	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-1471795_22	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1471795_22	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1471795_22	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-1471795_22	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-1471795_22	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1471795_22	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1471795_22	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1471795_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1471795_24	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-1471795_24	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-1471795_24	Pfam	PF07374	NA	DUF1492
UHGV-1471795_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1471795_24	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1471795_25	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1471795_25	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1471795_25	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1471795_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1471795_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1471795_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1471795_26	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-1471795_26	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1471795_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1471795_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1471795_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1471795_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1471795_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-1471795_27	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-1471795_27	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1471795_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1471795_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1471795_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1471795_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1471795_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1471795_28	UniRef90	UniRef90_A0A350VIU3	ATP-dependent Clp protease proteolytic subunit (Fragment)	NA
UHGV-1471795_28	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-1471795_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1471795_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1471795_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1471795_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1471795_29	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-1471795_29	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1471795_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1471795_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1471795_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1471795_29	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1471795_31	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-1471795_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1471795_32	Structural annotation	PF05657	NA	NA
UHGV-1471795_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1471795_33	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1471795_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1471795_33	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1471795_34	PHROG	phrog_88	major tail protein	tail
UHGV-1471795_34	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-1471795_34	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-1471795_34	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1471795_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1471795_34	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1471795_37	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1471795_37	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-1471795_37	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-1471795_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1471795_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1471795_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1471795_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1471795_38	UniRef90	UniRef90_UPI000E50043B	phage tail protein	NA
UHGV-1471795_38	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-1471795_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-1471795_38	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1471795_39	PHROG	phrog_13289	tail protein	tail
UHGV-1471795_39	UniRef90	UniRef90_D4M5A0	Phage minor structural protein, N-terminal region	NA
UHGV-1471795_39	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1471795_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1471795_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1471795_39	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1471795_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1471795_40	PHROG	phrog_14030	NA	unknown function
UHGV-1471795_40	UniRef90	UniRef90_A0A373N7H3	Peptidase M23	NA
UHGV-1471795_40	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-1471795_40	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1471795_40	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1471795_40	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1471795_40	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-1471795_41	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-1471795_41	PHROG	phrog_7158	NA	unknown function
UHGV-1471795_41	eggNOG-mapper	1033738.CAEP01000136_gene2868	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1471795_41	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1471795_41	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1471795_42	PHROG	phrog_4105	NA	unknown function
UHGV-1471795_42	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1471795_43	PHROG	phrog_443	holin	lysis
UHGV-1471795_43	UniRef90	UniRef90_UPI001F16E4E6	holin	NA
UHGV-1471795_43	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-1471795_43	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1471795_43	Structural annotation	PF16945	NA	NA
UHGV-1471795_44	PHROG	phrog_2742	endolysin	lysis
UHGV-1471795_44	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-1471795_44	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1471795_44	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1471795_44	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-1471795_44	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1471795_44	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA