UHGV-1472080

Genome information

Genome length 40,929 bps

CDS count 52

Completeness 87.96% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-1472080
vOTU ID	vOTU-024871
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0273368
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.27
Jumbo phage	No

Genome content
Genome length	40,929 bps
GC content	51.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.41%
Average CDS length	747.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1472080_2	PHROG	phrog_37900	NA	unknown function
UHGV-1472080_2	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-1472080_2	Pfam	PF19789	NA	DUF6273
UHGV-1472080_2	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1472080_2	Structural annotation	PF19789	NA	NA
UHGV-1472080_4	PHROG	phrog_30516	NA	unknown function
UHGV-1472080_4	UniRef90	UniRef90_A0A6N7VN03	Four helix bundle protein	NA
UHGV-1472080_4	Structural annotation	PF05635, NF008911	NA	NA
UHGV-1472080_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1472080_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1472080_5	UniRef90	UniRef90_R6GXU6	Reverse transcriptase domain-containing protein	NA
UHGV-1472080_5	eggNOG-mapper	742722.HMPREF9463_00262	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1472080_5	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1472080_5	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1472080_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1472080_5	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1472080_11	KOfam	K07497	K07497; putative transposase	NA
UHGV-1472080_11	PHROG	phrog_8463	transposase	integration and excision
UHGV-1472080_11	UniRef90	UniRef90_A0A1Q6RLB1	Integrase catalytic domain-containing protein	NA
UHGV-1472080_11	eggNOG-mapper	1123307.KB904367_gene1244	Transposase and inactivated derivatives	NA
UHGV-1472080_11	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1472080_11	Pfam	PF00665	Integrase core domain	rve
UHGV-1472080_11	Pfam	PF13683	Integrase core domain	rve_3
UHGV-1472080_11	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1472080_11	Structural annotation	PF00665, PF13518, NF033577, COG2801	NA	NA
UHGV-1472080_12	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1472080_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1472080_17	UniRef90	UniRef90_A0A1W1YQ31	Putative phage-type endonuclease	NA
UHGV-1472080_17	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-1472080_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1472080_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1472080_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1472080_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1472080_18	PHROG	phrog_674	NA	unknown function
UHGV-1472080_18	UniRef90	UniRef90_A0A4P9C8L7	NA	NA
UHGV-1472080_18	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-1472080_18	Pfam	PF07083	NA	DUF1351
UHGV-1472080_18	Structural annotation	PF07083	NA	NA
UHGV-1472080_19	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1472080_19	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1472080_19	UniRef90	UniRef90_UPI000F53F699	recombinase RecT	NA
UHGV-1472080_19	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-1472080_19	Pfam	PF03837	RecT family	RecT
UHGV-1472080_19	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1472080_19	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1472080_19	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1472080_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1472080_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1472080_20	UniRef90	UniRef90_A0A350TIB2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1472080_20	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-1472080_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1472080_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1472080_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1472080_21	eggNOG-mapper	742817.HMPREF9449_01803	NA	NA
UHGV-1472080_21	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-1472080_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1472080_22	PHROG	phrog_26861	NA	unknown function
UHGV-1472080_22	UniRef90	UniRef90_A0A356F3R1	Single-stranded DNA-binding protein	NA
UHGV-1472080_22	eggNOG-mapper	1304880.JAGB01000001_gene702	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1472080_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1472080_22	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-1472080_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1472080_22	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1472080_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1472080_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1472080_23	UniRef90	UniRef90_A0A2V2ET02	Single-stranded DNA-binding protein	NA
UHGV-1472080_23	eggNOG-mapper	1121423.JONT01000003_gene1118	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1472080_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1472080_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1472080_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1472080_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1472080_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1472080_24	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1472080_24	UniRef90	UniRef90_UPI0011581F2E	replication terminator protein	NA
UHGV-1472080_24	eggNOG-mapper	562743.JH976434_gene1044	NA	NA
UHGV-1472080_25	PHROG	phrog_1029	NA	unknown function
UHGV-1472080_25	eggNOG-mapper	1519439.JPJG01000059_gene1911	NA	NA
UHGV-1472080_25	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1472080_26	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-1472080_27	PHROG	phrog_3136	NA	unknown function
UHGV-1472080_27	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-1472080_27	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1472080_27	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1472080_29	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1472080_29	UniRef90	UniRef90_A0A373PYN5	NAD(P)-dependent oxidoreductase	NA
UHGV-1472080_29	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-1472080_29	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1472080_32	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1472080_32	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-1472080_32	eggNOG-mapper	702438.HMPREF9431_00759	HNH endonuclease	NA
UHGV-1472080_32	PADLOC	ZorE2_00001	HNH endonuclease	Zorya
UHGV-1472080_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1472080_32	Structural annotation	NF008448	NA	NA
UHGV-1472080_38	PHROG	phrog_918	NA	unknown function
UHGV-1472080_38	UniRef90	UniRef90_UPI001D020797	NA	NA
UHGV-1472080_38	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-1472080_38	Pfam	PF19791	NA	DUF6275
UHGV-1472080_38	Structural annotation	PF19791	NA	NA
UHGV-1472080_42	PHROG	phrog_3064	terminase	head and packaging
UHGV-1472080_42	UniRef90	UniRef90_A0A2I7QK24	Coil containing protein (Fragment)	NA
UHGV-1472080_43	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-1472080_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1472080_43	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-1472080_43	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-1472080_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-1472080_43	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1472080_44	PHROG	phrog_156	portal protein	head and packaging
UHGV-1472080_44	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-1472080_44	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1472080_46	PHROG	phrog_22978	NA	unknown function
UHGV-1472080_46	UniRef90	UniRef90_E2ZIB5	Putative septum site-determining protein MinC	NA
UHGV-1472080_46	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1472080_46	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-1472080_46	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1472080_46	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-1472080_51	PHROG	phrog_24113	NA	unknown function
UHGV-1472080_51	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1472080_51	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1472080_52	PHROG	phrog_371	major head protein	head and packaging
UHGV-1472080_52	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA