UHGV-1472341

Genome information

Genome length 39,812 bps

CDS count 73

Completeness 51.40% (medium-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-1472341
vOTU ID	vOTU-035631
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0267542
BioSample	SAMN02334025
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.43
Jumbo phage	No

Genome content
Genome length	39,812 bps
GC content	39.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	89.07%
Average CDS length	489.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1472341_5	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-1472341_12	Structural annotation	PF04492, TIGR01714	NA	NA
UHGV-1472341_14	Structural annotation	PF08299, NF004686	NA	NA
UHGV-1472341_15	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-1472341_15	UniRef90	UniRef90_A0A7H1MQI5	NA	NA
UHGV-1472341_15	eggNOG-mapper	762982.HMPREF9442_01170	NA	NA
UHGV-1472341_15	Pfam	PF14386	NA	DUF4417
UHGV-1472341_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1472341_15	Structural annotation	PF14386	NA	NA
UHGV-1472341_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1472341_17	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1472341_17	UniRef90	UniRef90_A0A174JKW6	Prophage antirepressor	NA
UHGV-1472341_17	eggNOG-mapper	667015.Bacsa_2685	BRO family, N-terminal domain	NA
UHGV-1472341_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1472341_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1472341_17	COG	COG3617	Prophage antirepressor	NA
UHGV-1472341_17	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1472341_20	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1472341_20	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1472341_20	UniRef90	UniRef90_A0A7W1G2G8	Methyltransferase	NA
UHGV-1472341_20	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-1472341_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1472341_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1472341_20	COG	COG0863	DNA modification methylase	NA
UHGV-1472341_20	Structural annotation	TIGR02469, COG2263	NA	NA
UHGV-1472341_21	PHROG	phrog_1569	NA	unknown function
UHGV-1472341_21	UniRef90	UniRef90_A0A3D1HM65	S-adenosylmethionine synthetase	NA
UHGV-1472341_21	eggNOG-mapper	411490.ANACAC_00747	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-1472341_21	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-1472341_21	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-1472341_21	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-1472341_22	PHROG	phrog_36422	NA	unknown function
UHGV-1472341_22	UniRef90	UniRef90_R6EF68	CdiA_C domain-containing protein	NA
UHGV-1472341_22	Structural annotation	PF18451	NA	NA
UHGV-1472341_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1472341_26	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1472341_26	UniRef90	UniRef90_A0A7H1MQH3	PBSX family phage terminase large subunit	NA
UHGV-1472341_26	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-1472341_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1472341_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1472341_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1472341_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1472341_26	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1472341_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-1472341_27	UniRef90	UniRef90_A0A7H1MQH2	Phage portal protein	NA
UHGV-1472341_27	eggNOG-mapper	457424.BFAG_02417	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1472341_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1472341_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1472341_29	PHROG	phrog_35295	NA	unknown function
UHGV-1472341_29	UniRef90	UniRef90_A0A174QL20	DOD-type homing endonuclease domain-containing protein	NA
UHGV-1472341_29	eggNOG-mapper	1122985.HMPREF1991_01538	NA	NA
UHGV-1472341_33	PHROG	phrog_32703	NA	unknown function
UHGV-1472341_33	UniRef90	UniRef90_A0A1I2SV68	NA	NA
UHGV-1472341_33	eggNOG-mapper	563008.HMPREF0665_01220	DNA restriction-modification system	NA
UHGV-1472341_33	Pfam	PF13708	NA	DUF4942
UHGV-1472341_33	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1472341_33	Structural annotation	PF13708, PF00398, MF_00607, NF011489, COG2263	NA	NA
UHGV-1472341_36	Structural annotation	PF13424, NF011886	NA	NA
UHGV-1472341_37	PHROG	phrog_2320	NA	unknown function
UHGV-1472341_37	Structural annotation	PF20840	NA	NA
UHGV-1472341_38	PHROG	phrog_5377	NA	unknown function
UHGV-1472341_38	eggNOG-mapper	1127692.HMPREF9075_00031	NA	NA
UHGV-1472341_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1472341_39	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1472341_39	UniRef90	UniRef90_UPI00068A9E49	phage antirepressor KilAC domain-containing protein	NA
UHGV-1472341_39	eggNOG-mapper	1235803.C825_02646	BRO family, N-terminal domain	NA
UHGV-1472341_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1472341_39	COG	COG3617	Prophage antirepressor	NA
UHGV-1472341_39	Structural annotation	PF03374, PF08346, COG3645, COG3561	NA	NA
UHGV-1472341_40	Structural annotation	PF02237, NF037951	NA	NA
UHGV-1472341_44	PHROG	phrog_824	NA	unknown function
UHGV-1472341_44	UniRef90	UniRef90_A0A7H1MQE6	VRR-NUC domain-containing protein	NA
UHGV-1472341_44	eggNOG-mapper	1537917.JU82_09230	VRR_NUC	NA
UHGV-1472341_44	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1472341_48	Structural annotation	PF00692, TIGR00576, COG0756	NA	NA
UHGV-1472341_49	PHROG	phrog_36980	NA	unknown function
UHGV-1472341_49	eggNOG-mapper	470145.BACCOP_01160	NA	NA
UHGV-1472341_50	PHROG	phrog_15937	NA	unknown function
UHGV-1472341_50	eggNOG-mapper	679189.HMPREF9019_0900	NA	NA
UHGV-1472341_51	PHROG	phrog_28300	NA	unknown function
UHGV-1472341_51	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-1472341_51	Structural annotation	PF14445	NA	NA
UHGV-1472341_55	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1472341_55	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1472341_55	Structural annotation	PF04492, TIGR01714	NA	NA
UHGV-1472341_56	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-1472341_58	UniRef90	UniRef90_A0A7H1MQC8	NA	NA
UHGV-1472341_58	eggNOG-mapper	1233951.IO90_00335	NA	NA
UHGV-1472341_58	Pfam	PF04480	NA	DUF559
UHGV-1472341_58	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-1472341_58	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-1472341_60	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1472341_60	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1472341_60	UniRef90	UniRef90_A0A646FRN8	dUTPase domain-containing protein	NA
UHGV-1472341_60	eggNOG-mapper	748727.CLJU_c10140	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1472341_60	Pfam	PF00692	dUTPase	dUTPase
UHGV-1472341_60	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1472341_60	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1472341_61	PHROG	phrog_2899	anti-repressor Ant	transcription regulation
UHGV-1472341_61	UniRef90	UniRef90_A0A133YZQ0	Bro-N domain-containing protein	NA
UHGV-1472341_61	eggNOG-mapper	1236504.HMPREF2132_11510	BRO family, N-terminal domain	NA
UHGV-1472341_61	COG	COG3617	Prophage antirepressor	NA
UHGV-1472341_62	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1472341_62	UniRef90	UniRef90_U6S322	BRO family protein (Fragment)	NA
UHGV-1472341_62	eggNOG-mapper	619693.HMPREF6745_2486	NA	NA
UHGV-1472341_62	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1472341_62	COG	COG3617	Prophage antirepressor	NA
UHGV-1472341_63	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1472341_63	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-1472341_63	UniRef90	UniRef90_A0A2T4TUQ5	KilA-N domain-containing protein	NA
UHGV-1472341_63	eggNOG-mapper	1123058.KB894238_gene1894	Phage antirepressor protein KilAC domain	NA
UHGV-1472341_63	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1472341_63	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1472341_63	Structural annotation	PF03374, COG3645	NA	NA
UHGV-1472341_64	PHROG	phrog_2319	NA	unknown function
UHGV-1472341_64	Structural annotation	PF03100, MF_01959, NF009635, COG2332	NA	NA
UHGV-1472341_65	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1472341_65	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1472341_65	UniRef90	UniRef90_A0A7H1MQG0	Bro-N domain-containing protein	NA
UHGV-1472341_65	eggNOG-mapper	1347393.HG726026_gene2597	BRO family, N-terminal domain	NA
UHGV-1472341_65	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1472341_65	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1472341_65	COG	COG3617	Prophage antirepressor	NA
UHGV-1472341_65	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1472341_66	Structural annotation	NF041587	NA	NA
UHGV-1472341_67	PHROG	phrog_5824	NA	unknown function
UHGV-1472341_68	PHROG	phrog_9196	NA	unknown function
UHGV-1472341_68	Structural annotation	PF21430	NA	NA
UHGV-1472341_69	PHROG	phrog_29	major head protein	head and packaging
UHGV-1472341_69	UniRef90	UniRef90_A0A1H4E7R0	Phage major capsid protein E	NA
UHGV-1472341_69	eggNOG-mapper	1227266.HMPREF1551_00512	NA	NA
UHGV-1472341_69	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-1472341_70	Structural annotation	PF20449	NA	NA
UHGV-1472341_71	Structural annotation	PF19586	NA	NA
UHGV-1472341_72	PHROG	phrog_5597	NA	unknown function
UHGV-1472341_72	Structural annotation	PF05657	NA	NA