UHGV-1472535

Genome information

Genome length 41,589 bps

CDS count 50

Completeness 66.07% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-1472535
vOTU ID	vOTU-035637
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0276803
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.33
Jumbo phage	No

Genome content
Genome length	41,589 bps
GC content	55.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.16%
Average CDS length	786.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1472535_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1472535_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1472535_1	UniRef90	UniRef90_A0A7U6QL48	Repressor	NA
UHGV-1472535_1	eggNOG-mapper	1095750.HMPREF9970_1005	Helix-turn-helix domain	NA
UHGV-1472535_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1472535_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1472535_2	UniRef90	UniRef90_A0A2N5PKD3	Phage repressor protein	NA
UHGV-1472535_2	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-1472535_2	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-1472535_2	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1472535_4	UniRef90	UniRef90_A0A2K4ZGQ9	DarA_C domain-containing protein	NA
UHGV-1472535_6	PHROG	phrog_7338	NA	unknown function
UHGV-1472535_6	UniRef90	UniRef90_C9LU58	Excisionase from transposon Tn916	NA
UHGV-1472535_6	eggNOG-mapper	857293.CAAU_0775	Excisionase from transposon Tn916	NA
UHGV-1472535_6	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-1472535_6	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-1472535_7	PHROG	phrog_30153	NA	unknown function
UHGV-1472535_7	UniRef90	UniRef90_E0NXL9	LysM domain protein	NA
UHGV-1472535_7	eggNOG-mapper	864563.HMPREF9166_0586	LysM domain	NA
UHGV-1472535_7	Pfam	PF01476	LysM domain	LysM
UHGV-1472535_7	COG	COG1388	LysM repeat	NA
UHGV-1472535_7	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-1472535_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1472535_8	UniRef90	UniRef90_C9LU61	Phage-type endonuclease	NA
UHGV-1472535_8	eggNOG-mapper	546271.Selsp_1353	YqaJ viral recombinase family protein	NA
UHGV-1472535_8	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1472535_8	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1472535_8	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1472535_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1472535_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1472535_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1472535_9	UniRef90	UniRef90_E0NZK9	Recombinase, phage RecT family	NA
UHGV-1472535_9	eggNOG-mapper	546271.Selsp_1352	Recombinase, phage RecT family	NA
UHGV-1472535_9	Pfam	PF03837	RecT family	RecT
UHGV-1472535_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1472535_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1472535_9	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1472535_11	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1472535_11	UniRef90	UniRef90_C9LU64	Phage replisome organizer N-terminal domain protein	NA
UHGV-1472535_11	eggNOG-mapper	546271.Selsp_1350	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1472535_11	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1472535_11	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1472535_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1472535_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1472535_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1472535_12	UniRef90	UniRef90_C9LU65	IstB domain protein ATP-binding protein	NA
UHGV-1472535_12	eggNOG-mapper	546271.Selsp_1349	Primosomal protein DnaI	NA
UHGV-1472535_12	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1472535_12	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1472535_12	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-1472535_14	eggNOG-mapper	585503.HMPREF7545_1722	HNH endonuclease	NA
UHGV-1472535_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1472535_15	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1472535_15	UniRef90	UniRef90_C9LU66	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1472535_15	eggNOG-mapper	936573.HMPREF1147_1315	NA	NA
UHGV-1472535_15	Pfam	PF14359	NA	DUF4406
UHGV-1472535_15	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1472535_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1472535_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1472535_16	UniRef90	UniRef90_C9LU67	Single-stranded DNA-binding protein	NA
UHGV-1472535_16	eggNOG-mapper	546271.Selsp_1347	Single-strand binding protein family	NA
UHGV-1472535_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1472535_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1472535_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1472535_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1472535_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1472535_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1472535_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1472535_17	UniRef90	UniRef90_C9LU68	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1472535_17	eggNOG-mapper	864563.HMPREF9166_1267	crossover junction endodeoxyribonuclease RusA	NA
UHGV-1472535_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1472535_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1472535_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1472535_18	PHROG	phrog_7713	NA	unknown function
UHGV-1472535_18	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1472535_19	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1472535_19	PHROG	phrog_923	NA	unknown function
UHGV-1472535_19	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1472535_19	Structural annotation	PF13599, NF011744	NA	NA
UHGV-1472535_28	PHROG	phrog_8684	NA	unknown function
UHGV-1472535_28	UniRef90	UniRef90_UPI000689A830	YopX family protein	NA
UHGV-1472535_28	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-1472535_28	Pfam	PF09643	YopX protein	YopX
UHGV-1472535_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1472535_29	eggNOG-mapper	1200557.JHWV01000001_gene279	NA	NA
UHGV-1472535_29	Structural annotation	TIGR01636	NA	NA
UHGV-1472535_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1472535_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1472535_30	UniRef90	UniRef90_D4S865	Terminase small subunit	NA
UHGV-1472535_30	eggNOG-mapper	585503.HMPREF7545_1730	Terminase small subunit	NA
UHGV-1472535_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1472535_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1472535_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1472535_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1472535_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1472535_31	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1472535_31	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-1472535_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1472535_31	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-1472535_31	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1472535_32	PHROG	phrog_1216	portal protein	head and packaging
UHGV-1472535_32	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-1472535_32	eggNOG-mapper	1485543.JMME01000020_gene791	Membrane	NA
UHGV-1472535_32	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1472535_32	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1472535_34	eggNOG-mapper	1485543.JMME01000020_gene789	NA	NA
UHGV-1472535_35	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1472535_35	UniRef90	UniRef90_UPI0004838F8E	NA	NA
UHGV-1472535_35	eggNOG-mapper	1485543.JMME01000020_gene788	NA	NA
UHGV-1472535_35	Pfam	PF17236	NA	DUF5309
UHGV-1472535_35	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-1472535_37	Structural annotation	PF20387	NA	NA
UHGV-1472535_38	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-1472535_38	Structural annotation	PF20387	NA	NA
UHGV-1472535_39	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-1472535_39	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1472535_39	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-1472535_40	PHROG	phrog_5417	NA	unknown function
UHGV-1472535_40	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-1472535_40	eggNOG-mapper	1459636.NTE_01434	NA	NA
UHGV-1472535_40	Structural annotation	PF12571	NA	NA
UHGV-1472535_41	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-1472535_41	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-1472535_41	Structural annotation	PF09458, NF012201	NA	NA
UHGV-1472535_42	eggNOG-mapper	936573.HMPREF1147_1348	tail collar domain protein	NA
UHGV-1472535_42	Pfam	PF04917	Bacterial shufflon protein, N-terminal constant region	Shufflon_N
UHGV-1472535_42	COG	COG4675	Phage tail collar domain	NA
UHGV-1472535_44	PHROG	phrog_17273	NA	unknown function
UHGV-1472535_44	Pfam	PF03382	NA	DUF285
UHGV-1472535_44	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1472535_44	COG	COG3209	NA	NA
UHGV-1472535_44	Structural annotation	PF03382	NA	NA
UHGV-1472535_45	Structural annotation	PF05899, MF_01537, NF007875, COG3123	NA	NA
UHGV-1472535_46	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-1472535_46	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-1472535_47	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-1472535_48	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-1472535_48	eggNOG-mapper	1485543.JMME01000020_gene776	NA	NA
UHGV-1472535_48	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-1472535_48	Structural annotation	PF13403	NA	NA
UHGV-1472535_50	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1472535_50	PHROG	phrog_2013	lytic tail protein	tail
UHGV-1472535_50	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-1472535_50	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1472535_50	Pfam	PF18809	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1	PBECR1