UHGV-1472557

Genome information

Genome length 30,715 bps

CDS count 44

Completeness 80.30% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-1472557
vOTU ID	vOTU-035638
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0215313
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.02
Jumbo phage	No

Genome content
Genome length	30,715 bps
GC content	49.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.04%
Average CDS length	638.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1472557_1	KOfam	K14059	int; integrase	NA
UHGV-1472557_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1472557_1	UniRef90	UniRef90_C8WA39	Integrase family protein	NA
UHGV-1472557_1	eggNOG-mapper	521095.Apar_0546	Belongs to the 'phage' integrase family	NA
UHGV-1472557_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1472557_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1472557_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1472557_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1472557_2	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1472557_2	UniRef90	UniRef90_UPI0015F32671	phage antirepressor KilAC domain-containing protein	NA
UHGV-1472557_2	eggNOG-mapper	411902.CLOBOL_04249	BRO family, N-terminal domain	NA
UHGV-1472557_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1472557_2	COG	COG3617	Prophage antirepressor	NA
UHGV-1472557_2	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1472557_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1472557_4	PHROG	phrog_14048	endolysin	lysis
UHGV-1472557_4	UniRef90	UniRef90_B9CLI8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1472557_4	eggNOG-mapper	553184.ATORI0001_1164	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1472557_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1472557_4	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1472557_4	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-1472557_4	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1472557_4	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-1472557_5	PHROG	phrog_443	holin	lysis
UHGV-1472557_5	UniRef90	UniRef90_A0A1H4JBG1	Phage r1t holin	NA
UHGV-1472557_5	eggNOG-mapper	553184.ATORI0001_1165	Putative lactococcus lactis phage r1t holin	NA
UHGV-1472557_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1472557_5	Structural annotation	PF16945	NA	NA
UHGV-1472557_7	PHROG	phrog_13141	NA	unknown function
UHGV-1472557_7	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-1472557_7	eggNOG-mapper	1111121.HMPREF1247_0855	NA	NA
UHGV-1472557_7	Structural annotation	PF20747, PF08931	NA	NA
UHGV-1472557_9	PHROG	phrog_538	minor tail protein	tail
UHGV-1472557_9	UniRef90	UniRef90_UPI001C0FDE3C	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1472557_9	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-1472557_9	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1472557_10	eggNOG-mapper	1111121.HMPREF1247_0852	NA	NA
UHGV-1472557_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1472557_11	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-1472557_11	UniRef90	UniRef90_A0A374VGU6	TMP_3 domain-containing protein	NA
UHGV-1472557_11	eggNOG-mapper	553184.ATORI0001_1171	Phage tail tape measure protein, TP901 family	NA
UHGV-1472557_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1472557_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1472557_11	COG	COG1340	NA	NA
UHGV-1472557_11	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1472557_14	PHROG	phrog_117	major tail protein	tail
UHGV-1472557_14	UniRef90	UniRef90_A0A8D5UII9	Tail protein	NA
UHGV-1472557_14	eggNOG-mapper	706433.HMPREF9430_01260	domain, Protein	NA
UHGV-1472557_14	COG	COG5492	NA	NA
UHGV-1472557_14	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-1472557_15	PHROG	phrog_123	tail terminator	connector
UHGV-1472557_15	Structural annotation	PF06141	NA	NA
UHGV-1472557_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-1472557_17	eggNOG-mapper	401473.BDP_1466	NA	NA
UHGV-1472557_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1472557_18	Structural annotation	PF09355	NA	NA
UHGV-1472557_19	PHROG	phrog_544	major head protein	head and packaging
UHGV-1472557_19	UniRef90	UniRef90_A0A7K3KIA2	Rho_N domain-containing protein	NA
UHGV-1472557_19	eggNOG-mapper	1121866.AUGK01000014_gene2054	NA	NA
UHGV-1472557_19	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1472557_20	PHROG	phrog_9857	head scaffolding protein	head and packaging
UHGV-1472557_20	eggNOG-mapper	1437609.BCAL_0174	NA	NA
UHGV-1472557_21	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1472557_21	UniRef90	UniRef90_A0A899IMX8	Capsid maturation protease	NA
UHGV-1472557_21	eggNOG-mapper	1437603.BMON_1143	NA	NA
UHGV-1472557_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-1472557_22	UniRef90	UniRef90_A0A374VFC7	Phage portal protein	NA
UHGV-1472557_22	eggNOG-mapper	742742.HMPREF9452_01310	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1472557_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1472557_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1472557_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1472557_23	UniRef90	UniRef90_UPI001D09400E	terminase family protein	NA
UHGV-1472557_23	eggNOG-mapper	521003.COLINT_02339	Terminase	NA
UHGV-1472557_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1472557_23	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1472557_24	UniRef90	UniRef90_A0A133XS49	Phage terminase, small subunit, P27 family	NA
UHGV-1472557_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1472557_26	UniRef90	UniRef90_UPI001D05E258	JAB domain-containing protein	NA
UHGV-1472557_27	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-1472557_27	UniRef90	UniRef90_R7BP41	ParB domain-containing protein	NA
UHGV-1472557_27	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-1472557_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1472557_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1472557_27	Pfam	PF14386	NA	DUF4417
UHGV-1472557_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1472557_27	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-1472557_28	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1472557_28	UniRef90	UniRef90_UPI0018AC2FDB	HNH endonuclease	NA
UHGV-1472557_28	eggNOG-mapper	521003.COLINT_02336	HNH nucleases	NA
UHGV-1472557_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1472557_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1472557_31	eggNOG-mapper	1125712.HMPREF1316_1526	NA	NA
UHGV-1472557_31	Structural annotation	PF04545, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-1472557_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1472557_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1472557_32	UniRef90	UniRef90_UPI00187749BE	single-stranded DNA-binding protein	NA
UHGV-1472557_32	eggNOG-mapper	553184.ATORI0001_1274	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1472557_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1472557_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1472557_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1472557_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1472557_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1472557_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1472557_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1472557_35	UniRef90	UniRef90_A0A087VUP6	Cytosine-specific methyltransferase	NA
UHGV-1472557_35	eggNOG-mapper	1384484.AEQU_0051	C-5 cytosine-specific DNA methylase	NA
UHGV-1472557_35	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1472557_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1472557_35	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1472557_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1472557_35	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-1472557_36	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1472557_36	UniRef90	UniRef90_B9CN54	Methyltransferase domain protein	NA
UHGV-1472557_36	eggNOG-mapper	553184.ATORI0001_1197	Methyltransferase domain	NA
UHGV-1472557_36	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1472557_36	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1472557_36	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1472557_36	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1472557_37	PHROG	phrog_21525	NA	unknown function
UHGV-1472557_38	PHROG	phrog_14105	NA	unknown function
UHGV-1472557_38	UniRef90	UniRef90_UPI000C077CF9	PPE family protein	NA
UHGV-1472557_38	eggNOG-mapper	1111121.HMPREF1247_0039	PPE family	NA
UHGV-1472557_38	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-1472557_38	COG	COG5651	PPE-repeat protein	NA
UHGV-1472557_39	PHROG	phrog_10048	NA	unknown function
UHGV-1472557_39	eggNOG-mapper	338966.Ppro_3721	NA	NA
UHGV-1472557_40	PHROG	phrog_34396	NA	unknown function
UHGV-1472557_40	UniRef90	UniRef90_UPI0009355547	NA	NA
UHGV-1472557_40	Pfam	PF07083	NA	DUF1351
UHGV-1472557_40	Structural annotation	PF07083	NA	NA
UHGV-1472557_41	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1472557_41	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1472557_41	UniRef90	UniRef90_A0A133XPE4	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1472557_41	eggNOG-mapper	1504822.CCNO01000013_gene309	crossover junction endodeoxyribonuclease activity	NA
UHGV-1472557_41	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1472557_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1472557_41	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1472557_43	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1472557_43	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1472557_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1472557_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1472557_44	UniRef90	UniRef90_UPI000E3CDD67	phage antirepressor KilAC domain-containing protein	NA
UHGV-1472557_44	eggNOG-mapper	78346.BRUM_0415	BRO family, N-terminal domain	NA
UHGV-1472557_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1472557_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1472557_44	COG	COG3617	Prophage antirepressor	NA
UHGV-1472557_44	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA