UHGV-1473427

Genome information

vOTU vOTU-019117

Genome length 30,621 bps

CDS count 55

Completeness 72.73% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-1473427
vOTU ID	vOTU-019117
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0214793
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.93
Jumbo phage	No

Genome content
Genome length	30,621 bps
GC content	53.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.22%
Average CDS length	511.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1473427_2	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-1473427_2	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-1473427_2	Pfam	PF06378	NA	DUF1071
UHGV-1473427_2	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-1473427_3	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-1473427_4	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1473427_4	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1473427_4	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1473427_4	Structural annotation	PF05772	NA	NA
UHGV-1473427_5	PHROG	phrog_7566	NA	unknown function
UHGV-1473427_5	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-1473427_5	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1473427_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1473427_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1473427_6	UniRef90	UniRef90_A0A8D9PDS7	Single strand binding protein	NA
UHGV-1473427_6	eggNOG-mapper	552398.HMPREF0866_01635	Single-strand binding protein family	NA
UHGV-1473427_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1473427_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1473427_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1473427_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1473427_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1473427_7	PHROG	phrog_15768	NA	unknown function
UHGV-1473427_7	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-1473427_7	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-1473427_7	Pfam	PF19808	NA	DUF6291
UHGV-1473427_7	Structural annotation	PF19808	NA	NA
UHGV-1473427_9	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1473427_9	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-1473427_9	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-1473427_9	Pfam	PF06356	NA	DUF1064
UHGV-1473427_9	Structural annotation	PF06356	NA	NA
UHGV-1473427_10	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1473427_10	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1473427_10	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-1473427_10	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1473427_10	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1473427_10	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1473427_10	COG	COG0863	DNA modification methylase	NA
UHGV-1473427_10	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1473427_13	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-1473427_14	Structural annotation	PF09947, NF006816, COG4830	NA	NA
UHGV-1473427_21	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1473427_22	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-1473427_22	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1473427_22	Structural annotation	PF13542	NA	NA
UHGV-1473427_23	PHROG	phrog_419	NA	unknown function
UHGV-1473427_23	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-1473427_23	eggNOG-mapper	388452.A6MAI4_9CAUD	NA	NA
UHGV-1473427_23	Structural annotation	PF14083	NA	NA
UHGV-1473427_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1473427_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1473427_24	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-1473427_24	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1473427_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1473427_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1473427_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1473427_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1473427_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1473427_25	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-1473427_25	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1473427_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1473427_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1473427_27	PHROG	phrog_8680	NA	unknown function
UHGV-1473427_27	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-1473427_27	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1473427_27	Pfam	PF14386	NA	DUF4417
UHGV-1473427_27	Structural annotation	PF14386	NA	NA
UHGV-1473427_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1473427_28	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-1473427_28	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1473427_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1473427_28	COG	COG2369	NA	NA
UHGV-1473427_28	Structural annotation	PF06152	NA	NA
UHGV-1473427_29	Structural annotation	PF18152	NA	NA
UHGV-1473427_30	Structural annotation	PF06810	NA	NA
UHGV-1473427_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-1473427_31	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-1473427_31	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-1473427_31	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1473427_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1473427_32	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1473427_33	PHROG	phrog_3366	NA	unknown function
UHGV-1473427_33	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1473427_33	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1473427_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1473427_34	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-1473427_34	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1473427_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1473427_34	Structural annotation	PF11114	NA	NA
UHGV-1473427_35	PHROG	phrog_3266	tail completion	connector
UHGV-1473427_35	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-1473427_35	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1473427_35	Structural annotation	PF12691	NA	NA
UHGV-1473427_36	PHROG	phrog_3099	NA	unknown function
UHGV-1473427_36	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-1473427_36	Structural annotation	TIGR02126	NA	NA
UHGV-1473427_37	PHROG	phrog_11299	NA	unknown function
UHGV-1473427_37	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1473427_37	Structural annotation	PF10666	NA	NA
UHGV-1473427_38	PHROG	phrog_706	NA	unknown function
UHGV-1473427_38	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1473427_38	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1473427_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1473427_38	Structural annotation	PF06854	NA	NA
UHGV-1473427_39	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-1473427_39	COG	COG1511	NA	NA
UHGV-1473427_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1473427_40	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1473427_40	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-1473427_40	COG	COG1511	NA	NA
UHGV-1473427_41	PHROG	phrog_1194	NA	unknown function
UHGV-1473427_41	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-1473427_41	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1473427_42	PHROG	phrog_13879	NA	unknown function
UHGV-1473427_42	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-1473427_42	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1473427_44	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-1473427_44	PHROG	phrog_11157	NA	unknown function
UHGV-1473427_44	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-1473427_44	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-1473427_44	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1473427_44	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1473427_44	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1473427_44	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1473427_45	PHROG	phrog_18725	NA	unknown function
UHGV-1473427_45	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-1473427_45	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1473427_45	Structural annotation	PF13754, COG2372	NA	NA
UHGV-1473427_47	PHROG	phrog_2295	NA	unknown function
UHGV-1473427_47	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1473427_47	Structural annotation	PF21722	NA	NA
UHGV-1473427_50	PHROG	phrog_2310	NA	unknown function
UHGV-1473427_50	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-1473427_52	PHROG	phrog_4105	NA	unknown function
UHGV-1473427_52	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1473427_52	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-1473427_53	PHROG	phrog_1129	holin	lysis
UHGV-1473427_53	UniRef90	UniRef90_A0A1Q6RI18	Enolase	NA
UHGV-1473427_53	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1473427_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1473427_53	Structural annotation	PF06946	NA	NA
UHGV-1473427_54	PHROG	phrog_9589	endolysin	lysis
UHGV-1473427_54	UniRef90	UniRef90_A0A8D9PDX2	MurNAc-LAA protein	NA
UHGV-1473427_54	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-1473427_54	Pfam	PF05257	CHAP domain	CHAP
UHGV-1473427_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1473427_54	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1473427_54	Structural annotation	PF01520, PF01471, TIGR02883, COG0860	NA	NA