UHGV-1473747

Genome information

vOTU vOTU-019795

Genome length 62,283 bps

CDS count 77

Completeness 67.23% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-1473747
vOTU ID	vOTU-019795
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0335681
BioSample	SAMN05414987
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.3
Jumbo phage	No

Genome content
Genome length	62,283 bps
GC content	43.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	90.27%
Average CDS length	731.84 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1473747_1	PHROG	phrog_3314	NA	unknown function
UHGV-1473747_1	eggNOG-mapper	665956.HMPREF1032_03235	NA	NA
UHGV-1473747_2	PHROG	phrog_26582	NA	unknown function
UHGV-1473747_2	UniRef90	UniRef90_A0A7U9JY81	Terminase-like family protein	NA
UHGV-1473747_2	eggNOG-mapper	1235802.C823_04558	NA	NA
UHGV-1473747_2	Structural annotation	PF03237, PF20441, MF_04146, NF033889, COG4626	NA	NA
UHGV-1473747_3	PHROG	phrog_2739	portal protein	head and packaging
UHGV-1473747_3	eggNOG-mapper	720555.BATR1942_07905	NA	NA
UHGV-1473747_3	Structural annotation	PF06074, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-1473747_4	PHROG	phrog_3313	NA	unknown function
UHGV-1473747_4	eggNOG-mapper	1235802.C823_04561	NA	NA
UHGV-1473747_5	PHROG	phrog_4147	NA	unknown function
UHGV-1473747_6	PHROG	phrog_4088	NA	unknown function
UHGV-1473747_6	eggNOG-mapper	665956.HMPREF1032_03240	NA	NA
UHGV-1473747_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1473747_7	PHROG	phrog_13983	NA	unknown function
UHGV-1473747_7	eggNOG-mapper	665956.HMPREF1032_03241	NA	NA
UHGV-1473747_8	PHROG	phrog_3853	NA	unknown function
UHGV-1473747_8	eggNOG-mapper	1280.SAXN108_2264	NA	NA
UHGV-1473747_9	Structural annotation	PF14276	NA	NA
UHGV-1473747_10	eggNOG-mapper	665956.HMPREF1032_03243	NA	NA
UHGV-1473747_10	Structural annotation	PF18957, NF038186	NA	NA
UHGV-1473747_11	eggNOG-mapper	742735.HMPREF9467_00757	NA	NA
UHGV-1473747_11	Structural annotation	PF09646	NA	NA
UHGV-1473747_12	PHROG	phrog_4051	NA	unknown function
UHGV-1473747_12	eggNOG-mapper	742733.HMPREF9469_04830	NA	NA
UHGV-1473747_13	PHROG	phrog_2729	virion structural protein	head and packaging
UHGV-1473747_13	eggNOG-mapper	397287.C807_01337	NA	NA
UHGV-1473747_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1473747_15	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1473747_15	UniRef90	UniRef90_A0A417HW29	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-1473747_15	eggNOG-mapper	871968.DESME_08990	NA	NA
UHGV-1473747_15	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-1473747_15	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-1473747_17	Structural annotation	PF12245	NA	NA
UHGV-1473747_20	PHROG	phrog_4211	tail length tape measure protein	tail
UHGV-1473747_20	UniRef90	UniRef90_UPI00156D6582	phage tail tape measure protein	NA
UHGV-1473747_20	eggNOG-mapper	537007.BLAHAN_05265	nuclear chromosome segregation	NA
UHGV-1473747_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1473747_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1473747_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1473747_21	PHROG	phrog_6160	NA	unknown function
UHGV-1473747_21	eggNOG-mapper	397291.C804_04947	NA	NA
UHGV-1473747_24	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-1473747_24	PHROG	phrog_9764	NA	unknown function
UHGV-1473747_24	UniRef90	UniRef90_UPI000C14CF5D	type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-1473747_24	eggNOG-mapper	999413.HMPREF1094_04511	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-1473747_24	PADLOC	AbiQ	AbiQ	Abi
UHGV-1473747_24	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-1473747_24	Structural annotation	PF13958	NA	NA
UHGV-1473747_25	UniRef90	UniRef90_A0A174AC63	Transposase zinc-ribbon domain	NA
UHGV-1473747_25	eggNOG-mapper	742740.HMPREF9474_01531	zinc-ribbon domain	NA
UHGV-1473747_27	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1473747_27	UniRef90	UniRef90_UPI000B4AF9A9	GIY-YIG nuclease family protein	NA
UHGV-1473747_27	eggNOG-mapper	742735.HMPREF9467_00770	GIY-YIG type nucleases (URI domain)	NA
UHGV-1473747_27	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-1473747_27	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1473747_27	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1473747_27	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-1473747_27	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-1473747_29	PHROG	phrog_1281	NA	unknown function
UHGV-1473747_29	UniRef90	UniRef90_A0A3R8KWE8	NA	NA
UHGV-1473747_29	eggNOG-mapper	1122173.AXVL01000004_gene821	Phage-associated protein	NA
UHGV-1473747_29	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1473747_29	COG	COG3600	NA	NA
UHGV-1473747_29	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1473747_30	UniRef90	UniRef90_A0A173UQ62	PemK-like protein	NA
UHGV-1473747_30	eggNOG-mapper	1122173.AXVL01000004_gene820	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-1473747_30	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1473747_30	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-1473747_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1473747_31	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-1473747_32	PHROG	phrog_6211	minor tail protein	tail
UHGV-1473747_32	UniRef90	UniRef90_A0A3B9GNI2	Peptidase S74 domain-containing protein	NA
UHGV-1473747_32	eggNOG-mapper	12336.Q331Z8_CBCP	NA	NA
UHGV-1473747_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1473747_33	PHROG	phrog_1401	NA	unknown function
UHGV-1473747_33	eggNOG-mapper	1347392.CCEZ01000045_gene2	NA	NA
UHGV-1473747_33	Structural annotation	PF07761	NA	NA
UHGV-1473747_35	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-1473747_35	eggNOG-mapper	1151292.QEW_0668	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1473747_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1473747_38	PHROG	phrog_27545	NA	unknown function
UHGV-1473747_38	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-1473747_38	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-1473747_40	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1473747_40	PHROG	phrog_435	endolysin	lysis
UHGV-1473747_40	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-1473747_40	eggNOG-mapper	1385512.N784_12965	Ami_3	NA
UHGV-1473747_40	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1473747_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1473747_40	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-1473747_41	PHROG	phrog_937	hemolysin	other
UHGV-1473747_42	PHROG	phrog_263	holin	lysis
UHGV-1473747_42	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-1473747_42	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-1473747_42	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1473747_42	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1473747_42	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1473747_43	AcrCatalog	cluster_47924	NA	NA
UHGV-1473747_45	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1473747_45	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1473747_45	UniRef90	UniRef90_A0A7Z1KDQ7	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1473747_45	eggNOG-mapper	1274524.BSONL12_04833	Deoxyuridine 5'-triphosphate	NA
UHGV-1473747_45	Pfam	PF00692	dUTPase	dUTPase
UHGV-1473747_45	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1473747_45	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1473747_47	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-1473747_47	UniRef90	UniRef90_A0A7X9HI26	4Fe-4S cluster-binding domain-containing protein	NA
UHGV-1473747_47	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-1473747_47	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-1473747_47	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-1473747_48	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-1473747_48	PHROG	phrog_25611	anaerobic ribonucleoside reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-1473747_48	UniRef90	UniRef90_A0A6B4ZRY4	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1473747_48	eggNOG-mapper	12336.Q332F0_CBCP	ribonucleoside-triphosphate reductase activity	NA
UHGV-1473747_48	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-1473747_48	Structural annotation	PF13597, MF_01420, TIGR02827, COG1328	NA	NA
UHGV-1473747_49	UniRef90	UniRef90_A0A1Q6QIQ4	Glutaredoxin domain-containing protein	NA
UHGV-1473747_49	Pfam	PF00462	Glutaredoxin	Glutaredoxin
UHGV-1473747_49	COG	COG0526	Thiol-disulfide isomerase or thioredoxin	NA
UHGV-1473747_49	Structural annotation	PF13192, MF_01132, TIGR02190, COG0695	NA	NA
UHGV-1473747_53	PHROG	phrog_474	phosphofructokinase	other
UHGV-1473747_53	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-1473747_53	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-1473747_53	Pfam	PF19905	NA	DUF6378
UHGV-1473747_53	Structural annotation	PF19905	NA	NA
UHGV-1473747_55	PHROG	phrog_6721	NA	unknown function
UHGV-1473747_55	UniRef90	UniRef90_UPI001D0A5CC3	HNH endonuclease	NA
UHGV-1473747_55	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-1473747_55	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1473747_55	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1473747_55	Structural annotation	PF02796, PF07463, TIGR02170	NA	NA
UHGV-1473747_57	Structural annotation	COG3084	NA	NA
UHGV-1473747_59	PHROG	phrog_8684	NA	unknown function
UHGV-1473747_59	UniRef90	UniRef90_A0A0F9FKN3	YopX domain-containing protein	NA
UHGV-1473747_59	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-1473747_59	Pfam	PF09643	YopX protein	YopX
UHGV-1473747_59	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1473747_61	KOfam	K06941	rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]	NA
UHGV-1473747_61	PHROG	phrog_24834	NA	unknown function
UHGV-1473747_61	UniRef90	UniRef90_A0A1G5ETK2	23S rRNA (Adenine2503-C2)-methyltransferase	NA
UHGV-1473747_61	eggNOG-mapper	525919.Apre_0823	rRNA (adenine-C2-)-methyltransferase activity	NA
UHGV-1473747_61	COG	COG0820	Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37	NA
UHGV-1473747_61	Structural annotation	MF_01849, TIGR00048, COG0820	NA	NA
UHGV-1473747_66	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1473747_66	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1473747_66	UniRef90	UniRef90_A0A374AAU4	DNA-directed DNA polymerase	NA
UHGV-1473747_66	eggNOG-mapper	397291.C804_00921	Helix-hairpin-helix motif	NA
UHGV-1473747_66	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1473747_66	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1473747_66	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-1473747_66	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1473747_66	Structural annotation	PF07733, PF17657, PF14579, PF04057, MF_01902, NF004550, COG0587	NA	NA
UHGV-1473747_67	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1473747_67	UniRef90	UniRef90_UPI000AC1197C	HNH endonuclease	NA
UHGV-1473747_67	eggNOG-mapper	1327970.R9ZVX1_9CAUD	HNH endonuclease	NA
UHGV-1473747_67	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1473747_67	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1473747_67	Structural annotation	PF13392, PF07463	NA	NA
UHGV-1473747_68	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1473747_68	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1473747_68	UniRef90	UniRef90_A0A316PJC2	DNA-directed DNA polymerase (Fragment)	NA
UHGV-1473747_68	eggNOG-mapper	397291.C804_00921	Helix-hairpin-helix motif	NA
UHGV-1473747_68	Pfam	PF02811	PHP domain	PHP
UHGV-1473747_68	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1473747_68	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1473747_68	Structural annotation	PF02811, MF_01561, NF007079, COG0613	NA	NA
UHGV-1473747_69	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-1473747_69	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1473747_69	UniRef90	UniRef90_A0A6N9P2Z3	Toprim domain-containing protein	NA
UHGV-1473747_69	eggNOG-mapper	247490.KSU1_C0210	Participates in initiation and elongation during chromosome replication	NA
UHGV-1473747_69	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1473747_69	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1473747_69	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1473747_69	COG	COG0305	Replicative DNA helicase	NA
UHGV-1473747_69	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-1473747_70	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1473747_70	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1473747_70	UniRef90	UniRef90_A0A133XSP9	Single-stranded DNA-binding protein	NA
UHGV-1473747_70	eggNOG-mapper	386415.NT01CX_0884	Single-stranded DNA-binding protein	NA
UHGV-1473747_70	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1473747_70	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1473747_70	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1473747_70	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1473747_70	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1473747_71	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1473747_71	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1473747_71	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1473747_71	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-1473747_72	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1473747_72	UniRef90	UniRef90_A0A317RDX1	Viral Gp157 protein	NA
UHGV-1473747_72	eggNOG-mapper	903814.ELI_1272	Siphovirus Gp157	NA
UHGV-1473747_72	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1473747_72	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1473747_74	KOfam	K14680	E6.5.1.3; RNA ligase [EC:6.5.1.3]	NA
UHGV-1473747_74	PHROG	phrog_8238	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1473747_74	UniRef90	UniRef90_A0A7X2N4V7	AAA family ATPase	NA
UHGV-1473747_74	eggNOG-mapper	411474.COPEUT_00782	AAA domain	NA
UHGV-1473747_74	Pfam	PF13671	AAA domain	AAA_33
UHGV-1473747_74	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1473747_74	Pfam	PF09511	RNA ligase	RNA_lig_T4_1
UHGV-1473747_74	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-1473747_74	Structural annotation	PF09511, PF13671, MF_04149, MF_01443, MF_03171, TIGR04075, COG5324, COG4639, COG2129	NA	NA
UHGV-1473747_75	KOfam	K07496	K07496; putative transposase	NA
UHGV-1473747_75	PHROG	phrog_506	transposase	integration and excision
UHGV-1473747_75	UniRef90	UniRef90_A0A084J8Z1	Transposase	NA
UHGV-1473747_75	eggNOG-mapper	1094980.Mpsy_1388	Probable transposase	NA
UHGV-1473747_75	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-1473747_75	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-1473747_75	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-1473747_75	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-1473747_75	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-1473747_75	COG	COG0675	Transposase	NA
UHGV-1473747_75	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-1473747_76	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1473747_76	UniRef90	UniRef90_A0A1C0AG94	NAD(P)-dependent oxidoreductase	NA
UHGV-1473747_76	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-1473747_76	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1473747_76	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA