UHGV-1473959

Genome information

Genome length 40,006 bps

CDS count 45

Completeness 96.44% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-1473959
vOTU ID	vOTU-013139
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0268575
BioSample	SAMEA3708595
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.75
Jumbo phage	No

Genome content
Genome length	40,006 bps
GC content	51.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.37%
Average CDS length	833.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1473959_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1473959_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1473959_1	UniRef90	UniRef90_A0A6G3M4R6	Recombinase family protein	NA
UHGV-1473959_1	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-1473959_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1473959_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1473959_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1473959_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1473959_1	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-1473959_2	PHROG	phrog_1847	NA	unknown function
UHGV-1473959_2	UniRef90	UniRef90_D1PLA1	T5orf172 domain-containing protein	NA
UHGV-1473959_2	eggNOG-mapper	411471.SUBVAR_05139	T5orf172	NA
UHGV-1473959_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-1473959_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1473959_2	Structural annotation	PF19962	NA	NA
UHGV-1473959_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1473959_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1473959_3	UniRef90	UniRef90_UPI001D0096C0	XRE family transcriptional regulator	NA
UHGV-1473959_3	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-1473959_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1473959_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1473959_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1473959_3	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-1473959_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1473959_4	UniRef90	UniRef90_UPI001D007243	helix-turn-helix domain-containing protein	NA
UHGV-1473959_4	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1473959_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1473959_4	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1473959_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1473959_6	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-1473959_6	UniRef90	UniRef90_A0A356CZA0	Oxidoreductase	NA
UHGV-1473959_6	eggNOG-mapper	1540257.JQMW01000004_gene443	Phage antirepressor protein KilAC domain	NA
UHGV-1473959_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1473959_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1473959_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1473959_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1473959_8	PHROG	phrog_31564	NA	unknown function
UHGV-1473959_13	PHROG	phrog_18562	NA	unknown function
UHGV-1473959_13	eggNOG-mapper	717606.PaecuDRAFT_3099	NA	NA
UHGV-1473959_14	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1473959_14	UniRef90	UniRef90_A0A3G2R530	NA	NA
UHGV-1473959_14	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-1473959_14	Pfam	PF10926	NA	DUF2800
UHGV-1473959_14	COG	COG2887	RecB family exonuclease	NA
UHGV-1473959_14	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1473959_15	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1473959_15	UniRef90	UniRef90_A0A3G2R4B8	NA	NA
UHGV-1473959_15	eggNOG-mapper	1089548.KI783301_gene2633	NA	NA
UHGV-1473959_15	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1473959_15	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-1473959_16	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1473959_16	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1473959_16	UniRef90	UniRef90_UPI0014517056	DNA polymerase	NA
UHGV-1473959_16	eggNOG-mapper	1449126.JQKL01000006_gene840	DNA polymerase	NA
UHGV-1473959_16	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1473959_16	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1473959_16	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1473959_17	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1473959_17	UniRef90	UniRef90_A0A3G2R4E0	Virulence-associated protein E	NA
UHGV-1473959_17	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-1473959_17	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1473959_17	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1473959_17	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-1473959_18	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1473959_18	UniRef90	UniRef90_UPI001B1C1B04	VRR-NUC domain-containing protein	NA
UHGV-1473959_18	eggNOG-mapper	1000569.HMPREF1040_0204	VRR_NUC	NA
UHGV-1473959_18	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-1473959_19	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1473959_19	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1473959_19	UniRef90	UniRef90_A0A327YN49	SNF2 domain-containing protein	NA
UHGV-1473959_19	eggNOG-mapper	86416.Clopa_0567	snf2 family	NA
UHGV-1473959_19	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1473959_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1473959_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1473959_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1473959_19	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1473959_21	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1473959_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1473959_22	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-1473959_22	eggNOG-mapper	762984.HMPREF9445_00166	DNA-packaging protein gp3	NA
UHGV-1473959_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1473959_22	Structural annotation	PF16677	NA	NA
UHGV-1473959_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1473959_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1473959_23	UniRef90	UniRef90_A0A373XSH6	Terminase	NA
UHGV-1473959_23	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-1473959_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1473959_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1473959_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-1473959_24	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-1473959_24	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1473959_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1473959_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1473959_25	UniRef90	UniRef90_UPI0018AA82F0	minor capsid protein	NA
UHGV-1473959_25	eggNOG-mapper	394503.Ccel_3295	Phage minor capsid protein 2	NA
UHGV-1473959_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1473959_25	COG	COG2733	NA	NA
UHGV-1473959_27	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1473959_27	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-1473959_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-1473959_28	UniRef90	UniRef90_A0A413RCT9	Capsid protein	NA
UHGV-1473959_28	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-1473959_28	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1473959_29	PHROG	phrog_1378	NA	unknown function
UHGV-1473959_29	eggNOG-mapper	1298920.KI911353_gene4849	NA	NA
UHGV-1473959_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1473959_30	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-1473959_31	PHROG	phrog_8710	NA	unknown function
UHGV-1473959_31	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-1473959_31	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1473959_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1473959_32	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1473959_33	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1473959_33	UniRef90	UniRef90_UPI0003F673FD	minor capsid protein	NA
UHGV-1473959_33	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-1473959_33	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1473959_33	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1473959_34	PHROG	phrog_820	major tail protein	tail
UHGV-1473959_34	eggNOG-mapper	1507.HMPREF0262_01184	domain, Protein	NA
UHGV-1473959_34	COG	COG5492	NA	NA
UHGV-1473959_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1473959_35	PHROG	phrog_8300	NA	unknown function
UHGV-1473959_35	eggNOG-mapper	1123263.AUKY01000051_gene1073	NA	NA
UHGV-1473959_35	Structural annotation	PF06896	NA	NA
UHGV-1473959_36	PHROG	phrog_8355	NA	unknown function
UHGV-1473959_36	UniRef90	UniRef90_A0A1M6RZ32	Bacteriophage Gp15 protein	NA
UHGV-1473959_36	eggNOG-mapper	1123263.AUKY01000051_gene1072	NA	NA
UHGV-1473959_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1473959_36	Structural annotation	PF06854	NA	NA
UHGV-1473959_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1473959_37	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-1473959_37	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-1473959_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1473959_37	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1473959_38	PHROG	phrog_1194	NA	unknown function
UHGV-1473959_38	eggNOG-mapper	1415775.U729_2615	NA	NA
UHGV-1473959_38	Pfam	PF20458	NA	DUF6711
UHGV-1473959_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1473959_39	PHROG	phrog_23052	NA	unknown function
UHGV-1473959_39	eggNOG-mapper	946235.CAER01000065_gene2433	NA	NA
UHGV-1473959_39	Structural annotation	PF05954, PF16532, NF033848, COG3500	NA	NA
UHGV-1473959_40	PHROG	phrog_19291	NA	unknown function
UHGV-1473959_40	eggNOG-mapper	1232449.BAHV02000021_gene1072	NA	NA
UHGV-1473959_40	Structural annotation	PF02191, COG3823	NA	NA
UHGV-1473959_41	PHROG	phrog_21765	NA	unknown function
UHGV-1473959_41	eggNOG-mapper	552398.HMPREF0866_01593	tail collar domain protein	NA
UHGV-1473959_41	COG	COG4675	Phage tail collar domain	NA
UHGV-1473959_42	PHROG	phrog_199	holin	lysis
UHGV-1473959_42	UniRef90	UniRef90_UPI001D02B647	phage holin family protein	NA
UHGV-1473959_42	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-1473959_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1473959_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1473959_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1473959_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1473959_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1473959_43	PHROG	phrog_15001	endolysin	lysis
UHGV-1473959_43	UniRef90	UniRef90_A0A3C0IHA8	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1473959_43	eggNOG-mapper	411473.RUMCAL_03176	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1473959_43	AcrCatalog	cluster_53013	NA	NA
UHGV-1473959_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1473959_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1473959_43	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-1473959_44	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1473959_44	UniRef90	UniRef90_UPI001D006529	Abi family protein	NA
UHGV-1473959_44	eggNOG-mapper	888746.HMPREF9180_0753	Abi-like protein	NA
UHGV-1473959_44	PADLOC	AbiD	AbiD	Abi
UHGV-1473959_44	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1473959_44	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1473959_44	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1473959_45	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1473959_45	PHROG	phrog_95	integrase	integration and excision
UHGV-1473959_45	UniRef90	UniRef90_U2M5Z6	Resolvase protein	NA
UHGV-1473959_45	eggNOG-mapper	411473.RUMCAL_00465	Resolvase, N terminal domain	NA
UHGV-1473959_45	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1473959_45	Pfam	PF07508	Recombinase	Recombinase
UHGV-1473959_45	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1473959_45	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA