UHGV-1474404

Genome information

vOTU vOTU-020024

Genome length 39,989 bps

CDS count 74

Completeness 69.40% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1474404
vOTU ID	vOTU-020024
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0268479
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.71
Jumbo phage	No

Genome content
Genome length	39,989 bps
GC content	48.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	86.39%
Average CDS length	470.19 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1474404_1	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-1474404_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1474404_1	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1474404_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1474404_2	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1474404_2	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-1474404_2	eggNOG-mapper	1449343.JQLQ01000002_gene1368	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1474404_2	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1474404_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1474404_2	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1474404_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1474404_2	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1474404_4	Structural annotation	TIGR03826	NA	NA
UHGV-1474404_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1474404_6	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-1474404_7	Structural annotation	PF14143	NA	NA
UHGV-1474404_8	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-1474404_8	eggNOG-mapper	870187.Thini_0915	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-1474404_8	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-1474404_8	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1474404_8	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1474404_10	eggNOG-mapper	857293.CAAU_1555	Probable zinc-ribbon domain	NA
UHGV-1474404_10	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-1474404_10	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-1474404_10	Structural annotation	PF13451	NA	NA
UHGV-1474404_11	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1474404_11	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1474404_11	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1474404_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-1474404_11	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1474404_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1474404_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1474404_12	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1474404_12	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1474404_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1474404_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1474404_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1474404_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1474404_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1474404_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1474404_13	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1474404_13	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1474404_13	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1474404_13	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1474404_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1474404_13	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1474404_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1474404_13	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1474404_14	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1474404_14	UniRef90	UniRef90_A0A8J7KX41	HNH endonuclease	NA
UHGV-1474404_14	eggNOG-mapper	63118.O80149_9CAUD	HNH endonuclease	NA
UHGV-1474404_14	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1474404_14	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1474404_14	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1474404_14	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1474404_17	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1474404_17	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1474404_17	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1474404_17	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1474404_19	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-1474404_19	Structural annotation	PF11998, COG5420	NA	NA
UHGV-1474404_21	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-1474404_22	Structural annotation	PF20331, COG5264	NA	NA
UHGV-1474404_23	Structural annotation	PF16677	NA	NA
UHGV-1474404_25	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-1474404_25	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-1474404_25	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-1474404_25	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1474404_26	Structural annotation	PF04319, COG4991	NA	NA
UHGV-1474404_30	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-1474404_30	PHROG	phrog_11947	NA	unknown function
UHGV-1474404_30	eggNOG-mapper	584708.Apau_0460	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1474404_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1474404_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1474404_30	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-1474404_34	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1474404_34	Structural annotation	PF14354, TIGR03655, COG3478	NA	NA
UHGV-1474404_35	PHROG	phrog_15768	NA	unknown function
UHGV-1474404_35	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-1474404_35	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-1474404_35	Pfam	PF19808	NA	DUF6291
UHGV-1474404_35	Structural annotation	PF19808	NA	NA
UHGV-1474404_36	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1474404_36	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1474404_36	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-1474404_36	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-1474404_36	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1474404_36	COG	COG0305	Replicative DNA helicase	NA
UHGV-1474404_36	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1474404_38	PHROG	phrog_1709	NA	unknown function
UHGV-1474404_38	eggNOG-mapper	500632.CLONEX_01053	NA	NA
UHGV-1474404_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1474404_41	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-1474404_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1474404_46	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-1474404_46	COG	COG3103	NA	NA
UHGV-1474404_46	Structural annotation	PF03843, TIGR00752, COG3065	NA	NA
UHGV-1474404_47	eggNOG-mapper	706433.HMPREF9430_00388	NA	NA
UHGV-1474404_47	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-1474404_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1474404_48	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1474404_48	UniRef90	UniRef90_A0A4Z0Y6Y0	AntA/AntB antirepressor	NA
UHGV-1474404_48	eggNOG-mapper	903814.ELI_3141	AntA/AntB antirepressor	NA
UHGV-1474404_48	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1474404_48	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1474404_48	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-1474404_49	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-1474404_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1474404_51	PHROG	phrog_95	integrase	integration and excision
UHGV-1474404_51	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-1474404_51	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-1474404_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1474404_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-1474404_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1474404_51	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1474404_53	eggNOG-mapper	1410670.JHXF01000014_gene1980	recombinase activity	NA
UHGV-1474404_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1474404_56	PHROG	phrog_3675	NA	unknown function
UHGV-1474404_56	UniRef90	UniRef90_UPI001D08FCA4	YjcQ family protein	NA
UHGV-1474404_56	eggNOG-mapper	397290.C810_01422	YjcQ protein	NA
UHGV-1474404_56	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1474404_56	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1474404_57	PHROG	phrog_3675	NA	unknown function
UHGV-1474404_57	UniRef90	UniRef90_A0A1V5XCJ6	YjcQ protein	NA
UHGV-1474404_57	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-1474404_57	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1474404_57	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1474404_59	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1474404_59	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-1474404_59	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1474404_59	COG	COG5410	NA	NA
UHGV-1474404_59	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1474404_62	PHROG	phrog_64	portal protein	head and packaging
UHGV-1474404_62	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-1474404_62	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1474404_62	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1474404_62	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1474404_66	PHROG	phrog_29	major head protein	head and packaging
UHGV-1474404_66	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-1474404_66	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-1474404_66	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1474404_66	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1474404_67	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-1474404_67	Structural annotation	TIGR01560	NA	NA
UHGV-1474404_68	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1474404_68	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1474404_70	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1474404_71	PHROG	phrog_158	major tail protein	tail
UHGV-1474404_71	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-1474404_71	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-1474404_71	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1474404_72	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-1474404_72	Pfam	PF16478	NA	DUF5055
UHGV-1474404_72	Structural annotation	PF16478	NA	NA
UHGV-1474404_73	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1474404_74	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1474404_74	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-1474404_74	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1474404_74	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA