UHGV-1474508

Genome information

Genome length 30,489 bps

CDS count 36

Completeness 83.48% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-1474508
vOTU ID	vOTU-024750
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0214078
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	79.32
Jumbo phage	No

Genome content
Genome length	30,489 bps
GC content	42.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	95.73%
Average CDS length	813.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1474508_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1474508_1	PHROG	phrog_7854	endolysin	lysis
UHGV-1474508_1	UniRef90	UniRef90_A0A4D6ADD3	Lysin	NA
UHGV-1474508_1	eggNOG-mapper	585203.SMSK564_1271	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1474508_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1474508_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1474508_1	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1474508_1	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-1474508_2	PHROG	phrog_32123	NA	unknown function
UHGV-1474508_2	UniRef90	UniRef90_UPI001CED1953	collagen-like protein	NA
UHGV-1474508_2	eggNOG-mapper	997830.HMPREF1124_0614	Collagen triple helix repeat (20 copies)	NA
UHGV-1474508_2	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1474508_3	PHROG	phrog_608	holin	lysis
UHGV-1474508_3	UniRef90	UniRef90_A0A428HES4	Phage holin protein (Holin_LLH)	NA
UHGV-1474508_3	eggNOG-mapper	1000588.HMPREF9965_1685	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1474508_3	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1474508_3	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-1474508_4	PHROG	phrog_199	holin	lysis
UHGV-1474508_4	UniRef90	UniRef90_A0A3R9KVL9	Holin family protein	NA
UHGV-1474508_4	eggNOG-mapper	413066.A1EAB5_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-1474508_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1474508_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1474508_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1474508_5	PHROG	phrog_1554	NA	unknown function
UHGV-1474508_5	UniRef90	UniRef90_UPI000F84695B	NA	NA
UHGV-1474508_5	eggNOG-mapper	768726.HMPREF9178_1050	NA	NA
UHGV-1474508_5	Pfam	PF07104	NA	DUF1366
UHGV-1474508_5	Structural annotation	PF07104	NA	NA
UHGV-1474508_6	PHROG	phrog_372	tail protein	tail
UHGV-1474508_6	UniRef90	UniRef90_UPI000A11B2FF	NA	NA
UHGV-1474508_6	eggNOG-mapper	1035189.HMPREF9954_0321	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1474508_6	Pfam	PF05895	NA	DUF859
UHGV-1474508_6	COG	COG4675	Phage tail collar domain	NA
UHGV-1474508_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1474508_7	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1474508_7	UniRef90	UniRef90_A0A1X0WMG5	Prophage_tail domain-containing protein	NA
UHGV-1474508_7	eggNOG-mapper	1035189.HMPREF9954_0320	Collagen triple helix repeat (20 copies)	NA
UHGV-1474508_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1474508_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1474508_7	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1474508_7	Structural annotation	PF14594, PF19081, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-1474508_8	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1474508_8	UniRef90	UniRef90_UPI001BD6A64F	phage tail family protein	NA
UHGV-1474508_8	eggNOG-mapper	1282664.H354_07740	Phage tail protein	NA
UHGV-1474508_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1474508_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1474508_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-1474508_8	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1474508_9	PHROG	phrog_1204	tail protein	tail
UHGV-1474508_9	UniRef90	UniRef90_F9PZ45	Tape measure domain protein	NA
UHGV-1474508_9	eggNOG-mapper	1035189.HMPREF9954_0317	phage tail tape measure protein	NA
UHGV-1474508_9	COG	COG5412	Phage-related protein	NA
UHGV-1474508_10	PHROG	phrog_706	NA	unknown function
UHGV-1474508_10	UniRef90	UniRef90_UPI000F82D21C	Gp15 family bacteriophage protein	NA
UHGV-1474508_10	eggNOG-mapper	646413.C5IUK2_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-1474508_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1474508_10	Structural annotation	PF06854	NA	NA
UHGV-1474508_11	PHROG	phrog_1061	NA	unknown function
UHGV-1474508_11	UniRef90	UniRef90_A0A150NRZ7	NA	NA
UHGV-1474508_11	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-1474508_11	Structural annotation	PF10666	NA	NA
UHGV-1474508_12	PHROG	phrog_820	major tail protein	tail
UHGV-1474508_12	UniRef90	UniRef90_A0A380K6S6	Tail shaft protein	NA
UHGV-1474508_12	eggNOG-mapper	646413.C5IUK0_9CAUD	NA	NA
UHGV-1474508_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1474508_13	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1474508_13	UniRef90	UniRef90_A0A1X1H8I8	Capsid protein	NA
UHGV-1474508_13	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-1474508_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1474508_13	Structural annotation	PF12691	NA	NA
UHGV-1474508_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1474508_14	UniRef90	UniRef90_UPI000F8429EC	minor capsid protein	NA
UHGV-1474508_14	eggNOG-mapper	537874.B3GW08_9CAUD	Minor capsid protein	NA
UHGV-1474508_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1474508_14	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1474508_15	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1474508_15	UniRef90	UniRef90_UPI0007693BA3	putative minor capsid protein	NA
UHGV-1474508_15	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-1474508_15	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1474508_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1474508_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1474508_16	UniRef90	UniRef90_A0A150NS05	NA	NA
UHGV-1474508_16	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-1474508_18	PHROG	phrog_2724	NA	unknown function
UHGV-1474508_18	UniRef90	UniRef90_UPI000F819166	Rho termination factor N-terminal domain-containing protein	NA
UHGV-1474508_18	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1474508_18	COG	COG0261	Ribosomal protein L21	NA
UHGV-1474508_18	Structural annotation	PF07498	NA	NA
UHGV-1474508_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-1474508_19	UniRef90	UniRef90_A0A4D6ASP8	Main capsid protein	NA
UHGV-1474508_19	eggNOG-mapper	537874.B3GW03_9CAUD	NA	NA
UHGV-1474508_19	Structural annotation	PF20911	NA	NA
UHGV-1474508_20	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1474508_20	UniRef90	UniRef90_A0A150NS01	NA	NA
UHGV-1474508_20	eggNOG-mapper	537874.B3GW02_9CAUD	NA	NA
UHGV-1474508_21	PHROG	phrog_3711	NA	unknown function
UHGV-1474508_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1474508_22	UniRef90	UniRef90_UPI001BD3DF86	capsid protein	NA
UHGV-1474508_22	eggNOG-mapper	764291.STRUR_2106	Phage minor capsid protein 2	NA
UHGV-1474508_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1474508_22	COG	COG2369	NA	NA
UHGV-1474508_22	Structural annotation	PF06152, PF15529	NA	NA
UHGV-1474508_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-1474508_23	UniRef90	UniRef90_A0A150NRY8	Phage minor capsid protein	NA
UHGV-1474508_23	eggNOG-mapper	537874.B3GW00_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1474508_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1474508_23	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1474508_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1474508_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1474508_24	PHROG	phrog_29775	NA	unknown function
UHGV-1474508_24	UniRef90	UniRef90_A0A150NNE4	Phage terminase large subunit	NA
UHGV-1474508_24	eggNOG-mapper	1214217.ALNF01000014_gene1382	Phage terminase, large subunit, PBSX family	NA
UHGV-1474508_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1474508_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1474508_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1474508_24	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1474508_25	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-1474508_25	UniRef90	UniRef90_A0A1X0WMD3	Terminase	NA
UHGV-1474508_25	eggNOG-mapper	764299.STRIC_2523	DNA packaging	NA
UHGV-1474508_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1474508_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1474508_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1474508_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1474508_26	UniRef90	UniRef90_A0A0E3WEJ3	NA	NA
UHGV-1474508_26	eggNOG-mapper	1214217.ALNF01000014_gene1384	NA	NA
UHGV-1474508_26	Pfam	PF07374	NA	DUF1492
UHGV-1474508_26	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-1474508_27	PHROG	phrog_4455	NA	unknown function
UHGV-1474508_27	UniRef90	UniRef90_A0A4J2CRE4	NA	NA
UHGV-1474508_28	PHROG	phrog_884	NA	unknown function
UHGV-1474508_28	UniRef90	UniRef90_UPI001BD2959D	NA	NA
UHGV-1474508_28	eggNOG-mapper	585203.SMSK564_1298	NA	NA
UHGV-1474508_28	Pfam	PF07116	NA	DUF1372
UHGV-1474508_28	Structural annotation	PF07116, COG3585	NA	NA
UHGV-1474508_30	PHROG	phrog_7136	NA	unknown function
UHGV-1474508_31	PHROG	phrog_121	NA	unknown function
UHGV-1474508_31	UniRef90	UniRef90_A0A371QFT6	NA	NA
UHGV-1474508_31	eggNOG-mapper	1282664.H354_07590	NA	NA
UHGV-1474508_31	Pfam	PF07852	NA	DUF1642
UHGV-1474508_31	Structural annotation	PF07852	NA	NA
UHGV-1474508_32	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1474508_32	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1474508_32	UniRef90	UniRef90_A0A4V6LMS5	Methyltransferase	NA
UHGV-1474508_32	eggNOG-mapper	888049.HMPREF8578_0283	DNA methylase	NA
UHGV-1474508_32	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1474508_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1474508_32	COG	COG0863	DNA modification methylase	NA
UHGV-1474508_32	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1474508_33	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1474508_33	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1474508_33	UniRef90	UniRef90_E6KJ69	IstB_IS21 domain-containing protein	NA
UHGV-1474508_33	eggNOG-mapper	1282664.H354_07570	DNA-dependent DNA replication	NA
UHGV-1474508_33	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1474508_33	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1474508_33	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-1474508_34	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1474508_34	UniRef90	UniRef90_UPI0019126D17	conserved phage C-terminal domain-containing protein	NA
UHGV-1474508_34	eggNOG-mapper	888049.HMPREF8578_0285	Phage replisome organizer	NA
UHGV-1474508_34	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-1474508_34	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1474508_34	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1474508_34	Structural annotation	PF09524, PF06970, TIGR02220, NF040642, COG5625	NA	NA
UHGV-1474508_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1474508_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1474508_35	UniRef90	UniRef90_A0A1F0NIR3	Replicative DNA helicase	NA
UHGV-1474508_35	eggNOG-mapper	888049.HMPREF8578_0287	Participates in initiation and elongation during chromosome replication	NA
UHGV-1474508_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1474508_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1474508_35	NCBIFam	NF004384.0	replicative DNA helicase	NA
UHGV-1474508_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-1474508_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1474508_36	PHROG	phrog_1555	NA	unknown function
UHGV-1474508_36	UniRef90	UniRef90_A0A0U0KPF8	Gp18	NA
UHGV-1474508_36	eggNOG-mapper	768726.HMPREF9178_1083	NA	NA
UHGV-1474508_36	Structural annotation	PF07870	NA	NA