UHGV-1474522

Genome information

Genome length 40,876 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-1474522
vOTU ID	vOTU-077237
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0273100
BioSample	SAMEA2147587
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.42
Jumbo phage	No

Genome content
Genome length	40,876 bps
GC content	40.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.17%
Average CDS length	825.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1474522_2	PHROG	phrog_9300	NA	unknown function
UHGV-1474522_3	Structural annotation	PF17399	NA	NA
UHGV-1474522_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1474522_5	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1474522_5	UniRef90	UniRef90_UPI0018ABB242	site-specific DNA-methyltransferase	NA
UHGV-1474522_5	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1474522_5	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1474522_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1474522_5	COG	COG0863	DNA modification methylase	NA
UHGV-1474522_5	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1474522_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1474522_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1474522_7	UniRef90	UniRef90_A0A2V2C1N3	Single-stranded DNA-binding protein	NA
UHGV-1474522_7	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-1474522_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1474522_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1474522_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1474522_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1474522_7	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1474522_8	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1474522_8	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1474522_8	UniRef90	UniRef90_A0A396NX04	IstB_IS21 domain-containing protein	NA
UHGV-1474522_8	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-1474522_8	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1474522_8	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1474522_8	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1474522_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1474522_9	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-1474522_9	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-1474522_9	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-1474522_10	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1474522_10	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1474522_10	UniRef90	UniRef90_A0A136WJ13	Endodeoxyribonuclease RusA	NA
UHGV-1474522_10	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-1474522_10	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1474522_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1474522_10	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1474522_11	PHROG	phrog_7566	NA	unknown function
UHGV-1474522_11	UniRef90	UniRef90_A0A7X5CEC2	Phosphoenolpyruvate carboxykinase	NA
UHGV-1474522_11	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-1474522_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1474522_12	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1474522_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1474522_13	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1474522_13	UniRef90	UniRef90_UPI001439856C	ERF family protein	NA
UHGV-1474522_13	eggNOG-mapper	559189.B6SBX8_9CAUD	ERF superfamily	NA
UHGV-1474522_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-1474522_18	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1474522_22	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1474522_22	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-1474522_22	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-1474522_22	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1474522_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1474522_22	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1474522_25	KOfam	K14059	int; integrase	NA
UHGV-1474522_25	PHROG	phrog_1	integrase	integration and excision
UHGV-1474522_25	UniRef90	UniRef90_UPI001C109D33	site-specific integrase	NA
UHGV-1474522_25	eggNOG-mapper	558169.AGAV01000001_gene3323	Phage integrase family	NA
UHGV-1474522_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1474522_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1474522_25	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1474522_26	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-1474522_26	UniRef90	UniRef90_A0A3D1LAM6	Helicase ATP-binding domain-containing protein (Fragment)	NA
UHGV-1474522_26	eggNOG-mapper	689781.AUJX01000003_gene2804	SNF2 family N-terminal domain	NA
UHGV-1474522_26	PADLOC	DrmD_00004	DrmD	DISARM
UHGV-1474522_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1474522_26	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1474522_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1474522_27	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA
UHGV-1474522_29	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1474522_29	UniRef90	UniRef90_A0A8D9UH72	Stabilization protein (Fragment)	NA
UHGV-1474522_29	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-1474522_29	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1474522_30	PHROG	phrog_12105	NA	unknown function
UHGV-1474522_30	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1474522_31	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-1474522_31	PHROG	phrog_6523	endolysin	lysis
UHGV-1474522_31	UniRef90	UniRef90_A0A2G3Q1P4	Peptidase_M15_4 domain-containing protein	NA
UHGV-1474522_31	eggNOG-mapper	642492.Clole_1880	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1474522_31	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-1474522_31	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1474522_31	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-1474522_32	PHROG	phrog_1129	holin	lysis
UHGV-1474522_32	UniRef90	UniRef90_UPI001C1096AE	phage holin family protein	NA
UHGV-1474522_32	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1474522_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1474522_32	Structural annotation	PF06946	NA	NA
UHGV-1474522_33	PHROG	phrog_1863	NA	unknown function
UHGV-1474522_33	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-1474522_33	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-1474522_37	UniRef90	UniRef90_F6DLP9	Mtd_N domain-containing protein	NA
UHGV-1474522_37	COG	COG5434	Polygalacturonase	NA
UHGV-1474522_38	PHROG	phrog_15239	NA	unknown function
UHGV-1474522_39	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1474522_39	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-1474522_39	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-1474522_39	Pfam	PF13252	NA	DUF4043
UHGV-1474522_39	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1474522_39	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1474522_40	PHROG	phrog_13908	NA	unknown function
UHGV-1474522_40	UniRef90	UniRef90_UPI0012DFC3C8	ribosomal-processing cysteine protease Prp	NA
UHGV-1474522_40	eggNOG-mapper	1321782.HMPREF1986_00346	NA	NA
UHGV-1474522_41	KOfam	K07584	NA	NA
UHGV-1474522_41	PHROG	phrog_4478	peptidase	other
UHGV-1474522_41	UniRef90	UniRef90_UPI001AEB1E59	ribosomal-processing cysteine protease Prp	NA
UHGV-1474522_41	eggNOG-mapper	926561.KB900617_gene1817	Cysteine protease Prp	NA
UHGV-1474522_41	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1474522_41	COG	COG2868	NA	NA
UHGV-1474522_42	PHROG	phrog_156	portal protein	head and packaging
UHGV-1474522_42	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-1474522_42	eggNOG-mapper	748224.HMPREF9436_02547	NA	NA
UHGV-1474522_42	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1474522_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1474522_43	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1474522_43	UniRef90	UniRef90_R5AXD9	Conserved domain protein	NA
UHGV-1474522_43	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1474522_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1474522_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-1474522_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1474522_44	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1474522_44	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-1474522_44	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1474522_44	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1474522_44	Structural annotation	PF16677	NA	NA
UHGV-1474522_47	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1474522_47	Structural annotation	NF001994	NA	NA