UHGV-1474761

Genome information

Genome length 30,761 bps

CDS count 45

Completeness 96.49% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-1474761
vOTU ID	vOTU-067478
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0215577
BioSample	SAMN02334020
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.59
Jumbo phage	No

Genome content
Genome length	30,761 bps
GC content	44.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.33%
Average CDS length	618.07 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1474761_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1474761_2	PHROG	phrog_20388	endolysin	lysis
UHGV-1474761_2	UniRef90	UniRef90_A0A3A9S8B2	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1474761_2	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-1474761_2	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1474761_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1474761_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1474761_2	Pfam	PF01476	LysM domain	LysM
UHGV-1474761_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1474761_2	Structural annotation	PF18013, NF008758, COG5632	NA	NA
UHGV-1474761_3	PHROG	phrog_36029	NA	unknown function
UHGV-1474761_3	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-1474761_3	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-1474761_3	Structural annotation	PF09682	NA	NA
UHGV-1474761_4	eggNOG-mapper	1280671.AUJH01000012_gene3135	NA	NA
UHGV-1474761_6	PHROG	phrog_134	NA	unknown function
UHGV-1474761_6	UniRef90	UniRef90_A0A3A9SC88	XkdX family protein	NA
UHGV-1474761_6	eggNOG-mapper	478749.BRYFOR_07637	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1474761_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1474761_6	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1474761_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1474761_8	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1474761_8	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1474761_8	UniRef90	UniRef90_A0A6H1MX33	Putative reverse transcriptase	NA
UHGV-1474761_8	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1474761_8	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1474761_8	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1474761_8	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1474761_8	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1474761_9	PHROG	phrog_5302	tail protein	tail
UHGV-1474761_9	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-1474761_9	Structural annotation	PF16323, COG3979	NA	NA
UHGV-1474761_10	PHROG	phrog_1220	head protein	head and packaging
UHGV-1474761_10	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-1474761_10	eggNOG-mapper	431943.CKL_4054	COG NOG18825 non supervised orthologous group	NA
UHGV-1474761_10	Structural annotation	PF20747	NA	NA
UHGV-1474761_11	PHROG	phrog_538	minor tail protein	tail
UHGV-1474761_11	UniRef90	UniRef90_UPI001111490C	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1474761_11	eggNOG-mapper	397290.C810_00431	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1474761_11	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1474761_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1474761_12	PHROG	phrog_36410	NA	unknown function
UHGV-1474761_12	UniRef90	UniRef90_A0A3A9SB17	Phage tail family protein	NA
UHGV-1474761_12	eggNOG-mapper	397290.C810_00430	Phage tail protein	NA
UHGV-1474761_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1474761_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1474761_12	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1474761_13	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-1474761_13	eggNOG-mapper	333138.LQ50_04250	Phage tail tape measure protein	NA
UHGV-1474761_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1474761_13	Structural annotation	COG5280	NA	NA
UHGV-1474761_14	PHROG	phrog_2115	tail protein	tail
UHGV-1474761_14	eggNOG-mapper	397290.C810_00428	NA	NA
UHGV-1474761_14	Structural annotation	PF11836	NA	NA
UHGV-1474761_15	PHROG	phrog_88	major tail protein	tail
UHGV-1474761_15	UniRef90	UniRef90_A0A3A9SPP2	Phage tail protein	NA
UHGV-1474761_15	eggNOG-mapper	397290.C810_00427	phage major tail protein, phi13 family	NA
UHGV-1474761_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1474761_15	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1474761_16	PHROG	phrog_78	tail terminator	connector
UHGV-1474761_16	eggNOG-mapper	411470.RUMGNA_02072	NA	NA
UHGV-1474761_16	Structural annotation	PF05657, NF040576, COG3978	NA	NA
UHGV-1474761_17	UniRef90	UniRef90_R9KQ46	HK97 gp10 family phage protein	NA
UHGV-1474761_17	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-1474761_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1474761_17	Structural annotation	TIGR01725	NA	NA
UHGV-1474761_18	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1474761_18	UniRef90	UniRef90_C9LCM8	Putative phage head-tail adaptor	NA
UHGV-1474761_18	eggNOG-mapper	397290.C810_00424	NA	NA
UHGV-1474761_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1474761_19	PHROG	phrog_5223	neck protein	connector
UHGV-1474761_19	UniRef90	UniRef90_A0A3A9T3V2	DNA-packaging protein	NA
UHGV-1474761_19	eggNOG-mapper	397290.C810_00423	NA	NA
UHGV-1474761_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1474761_21	UniRef90	UniRef90_A0A6B9ST82	Capsid protein	NA
UHGV-1474761_21	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-1474761_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1474761_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1474761_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1474761_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1474761_22	KOfam	K06904	NA	NA
UHGV-1474761_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1474761_22	UniRef90	UniRef90_A0A6B9SQY4	Prohead protease	NA
UHGV-1474761_22	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-1474761_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1474761_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1474761_22	COG	COG3740	Phage head maturation protease	NA
UHGV-1474761_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1474761_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-1474761_23	UniRef90	UniRef90_A0A7C9LEF5	Phage portal protein	NA
UHGV-1474761_23	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-1474761_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1474761_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1474761_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1474761_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1474761_24	UniRef90	UniRef90_A0A7C9KZF1	Terminase large subunit	NA
UHGV-1474761_24	eggNOG-mapper	397290.C810_00418	Phage Terminase	NA
UHGV-1474761_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1474761_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1474761_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1474761_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1474761_25	PHROG	phrog_1066	NA	unknown function
UHGV-1474761_25	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-1474761_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1474761_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1474761_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1474761_26	UniRef90	UniRef90_A0A6B9STP6	Putative endonuclease	NA
UHGV-1474761_26	eggNOG-mapper	411470.RUMGNA_02060	HNH endonuclease	NA
UHGV-1474761_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1474761_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1474761_27	PHROG	phrog_1558	NA	unknown function
UHGV-1474761_27	UniRef90	UniRef90_A0A6B9SRU0	RNA polymerase sigma-70 factor	NA
UHGV-1474761_27	eggNOG-mapper	397290.C810_00415	NA	NA
UHGV-1474761_27	Structural annotation	PF13384, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-1474761_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1474761_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1474761_28	UniRef90	UniRef90_UPI001C0B75F0	single-stranded DNA-binding protein	NA
UHGV-1474761_28	eggNOG-mapper	411470.RUMGNA_02057	Single-strand binding protein family	NA
UHGV-1474761_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1474761_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1474761_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1474761_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1474761_28	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1474761_30	PHROG	phrog_824	NA	unknown function
UHGV-1474761_30	UniRef90	UniRef90_A0A3A9SQW6	VRR-NUC domain-containing protein	NA
UHGV-1474761_30	eggNOG-mapper	397290.C810_00407	VRR_NUC	NA
UHGV-1474761_30	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1474761_30	Structural annotation	PF08774	NA	NA
UHGV-1474761_32	PHROG	phrog_32437	NA	unknown function
UHGV-1474761_32	UniRef90	UniRef90_A0A3A9STR1	Lytic transglycosylase domain-containing protein	NA
UHGV-1474761_32	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-1474761_32	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1474761_32	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1474761_32	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-1474761_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1474761_33	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-1474761_33	Structural annotation	PF21578	NA	NA
UHGV-1474761_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1474761_34	PHROG	phrog_26861	NA	unknown function
UHGV-1474761_34	UniRef90	UniRef90_A0A2K4ZKM5	Single-stranded DNA-binding protein	NA
UHGV-1474761_34	eggNOG-mapper	351627.Csac_2007	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1474761_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1474761_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1474761_34	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1474761_36	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1474761_36	UniRef90	UniRef90_A0A6B9SRT0	CMP glycosidase	NA
UHGV-1474761_36	eggNOG-mapper	397290.C810_00403	NA	NA
UHGV-1474761_36	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1474761_37	eggNOG-mapper	411460.RUMTOR_01699	NA	NA
UHGV-1474761_38	eggNOG-mapper	1235798.C817_02588	NA	NA
UHGV-1474761_40	PHROG	phrog_20014	NA	unknown function
UHGV-1474761_40	eggNOG-mapper	742741.HMPREF9475_00408	NA	NA
UHGV-1474761_41	PHROG	phrog_6058	NA	unknown function
UHGV-1474761_41	UniRef90	UniRef90_A0A3A9SV11	DNA-binding protein	NA
UHGV-1474761_41	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-1474761_41	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1474761_43	eggNOG-mapper	397291.C804_01045	NA	NA
UHGV-1474761_44	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1474761_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1474761_44	UniRef90	UniRef90_A0A6B9SR07	HTH cro/C1-type domain-containing protein	NA
UHGV-1474761_44	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-1474761_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1474761_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1474761_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1474761_45	KOfam	K14059	int; integrase	NA
UHGV-1474761_45	PHROG	phrog_1	integrase	integration and excision
UHGV-1474761_45	UniRef90	UniRef90_A0A6B9SRR6	Integrase	NA
UHGV-1474761_45	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-1474761_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1474761_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1474761_45	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA