UHGV-1474830

Genome information

Genome length 42,592 bps

CDS count 66

Completeness 99.01% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-1474830
vOTU ID	vOTU-066857
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0281757
BioSample	SAMN05414894
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39
Jumbo phage	No

Genome content
Genome length	42,592 bps
GC content	48.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.34%
Average CDS length	587.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1474830_1	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-1474830_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1474830_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1474830_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1474830_2	UniRef90	UniRef90_A0A410PX27	IstB_IS21 domain-containing protein	NA
UHGV-1474830_2	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-1474830_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1474830_2	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1474830_3	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1474830_3	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1474830_3	UniRef90	UniRef90_R6ZAS0	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1474830_3	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-1474830_3	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1474830_3	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1474830_3	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1474830_4	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1474830_4	UniRef90	UniRef90_UPI000853A731	NUMOD4 domain-containing protein	NA
UHGV-1474830_4	eggNOG-mapper	324831.LGAS_0604	NUMOD1 domain	NA
UHGV-1474830_4	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1474830_4	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1474830_5	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1474830_5	UniRef90	UniRef90_UPI0005CACF1F	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-1474830_5	eggNOG-mapper	379329.Q08J32_9CAUD	HNH endonuclease	NA
UHGV-1474830_5	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1474830_6	PHROG	phrog_18716	NA	unknown function
UHGV-1474830_6	UniRef90	UniRef90_A0A372V803	NA	NA
UHGV-1474830_6	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-1474830_6	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1474830_7	PHROG	phrog_23451	NA	unknown function
UHGV-1474830_7	UniRef90	UniRef90_C0DAL7	DarA_C domain-containing protein	NA
UHGV-1474830_7	eggNOG-mapper	411467.BACCAP_02623	NA	NA
UHGV-1474830_7	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-1474830_7	Structural annotation	PF18789	NA	NA
UHGV-1474830_9	Structural annotation	PF16533, COG5420	NA	NA
UHGV-1474830_11	eggNOG-mapper	1203606.HMPREF1526_00222	NA	NA
UHGV-1474830_13	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-1474830_16	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1474830_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1474830_20	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1474830_20	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1474830_20	UniRef90	UniRef90_A0A252F729	Bro-N domain-containing protein	NA
UHGV-1474830_20	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-1474830_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1474830_20	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1474830_20	COG	COG3617	Prophage antirepressor	NA
UHGV-1474830_20	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1474830_22	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1474830_22	PHROG	phrog_923	NA	unknown function
UHGV-1474830_22	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1474830_22	Structural annotation	PF13599, NF033086, COG1357	NA	NA
UHGV-1474830_24	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1474830_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1474830_24	UniRef90	UniRef90_UPI001899D561	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1474830_24	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1474830_24	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1474830_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1474830_24	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1474830_26	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1474830_26	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1474830_26	UniRef90	UniRef90_A0A7V6TV02	FAD-dependent thymidylate synthase	NA
UHGV-1474830_26	eggNOG-mapper	509191.AEDB02000067_gene837	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1474830_26	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1474830_26	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-1474830_26	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1474830_26	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1474830_28	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1474830_28	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1474830_28	UniRef90	UniRef90_A0A1G5EU37	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1474830_28	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1474830_28	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1474830_28	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-1474830_29	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1474830_29	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1474830_29	UniRef90	UniRef90_H1CER1	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-1474830_29	eggNOG-mapper	1291050.JAGE01000001_gene2060	Phage plasmid primase, P4 family	NA
UHGV-1474830_29	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1474830_29	Pfam	PF19263	NA	DUF5906
UHGV-1474830_29	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1474830_29	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1474830_29	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1474830_29	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-1474830_30	Structural annotation	PF13744, TIGR03070, COG1396	NA	NA
UHGV-1474830_31	Structural annotation	PF16677	NA	NA
UHGV-1474830_36	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1474830_36	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-1474830_36	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-1474830_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1474830_36	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1474830_36	COG	COG5410	NA	NA
UHGV-1474830_36	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1474830_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-1474830_37	UniRef90	UniRef90_A0A414B012	Phage portal protein	NA
UHGV-1474830_37	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1474830_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1474830_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1474830_38	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1474830_38	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1474830_38	COG	COG2369	NA	NA
UHGV-1474830_38	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1474830_39	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-1474830_40	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1474830_40	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-1474830_40	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-1474830_40	Pfam	PF17236	NA	DUF5309
UHGV-1474830_40	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-1474830_41	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-1474830_41	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-1474830_41	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1474830_41	Structural annotation	TIGR01560	NA	NA
UHGV-1474830_42	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1474830_44	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1474830_45	eggNOG-mapper	469596.HMPREF9488_01310	NA	NA
UHGV-1474830_45	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1474830_46	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-1474830_46	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-1474830_46	Pfam	PF16478	NA	DUF5055
UHGV-1474830_46	Structural annotation	PF16478	NA	NA
UHGV-1474830_47	eggNOG-mapper	469596.HMPREF9488_01312	NA	NA
UHGV-1474830_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1474830_48	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1474830_48	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1474830_50	PHROG	phrog_6616	tail protein	tail
UHGV-1474830_50	eggNOG-mapper	445972.ANACOL_01865	NA	NA
UHGV-1474830_54	UniRef90	UniRef90_R6AVY2	Cell wall-associated hydrolase invasion-associated protein	NA
UHGV-1474830_54	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-1474830_54	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1474830_54	Structural annotation	NF033743, COG0791	NA	NA
UHGV-1474830_55	PHROG	phrog_1863	NA	unknown function
UHGV-1474830_55	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-1474830_56	PHROG	phrog_443	holin	lysis
UHGV-1474830_56	UniRef90	UniRef90_UPI0008F89B51	holin	NA
UHGV-1474830_56	eggNOG-mapper	1163671.JAGI01000002_gene1943	Putative lactococcus lactis phage r1t holin	NA
UHGV-1474830_56	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1474830_56	Structural annotation	PF16945	NA	NA
UHGV-1474830_57	PHROG	phrog_21718	NA	unknown function
UHGV-1474830_58	PHROG	phrog_16490	NA	unknown function
UHGV-1474830_58	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-1474830_59	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1474830_60	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-1474830_63	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1474830_63	UniRef90	UniRef90_A0A843H617	Siphovirus Gp157 family protein	NA
UHGV-1474830_63	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-1474830_63	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1474830_63	Structural annotation	PF05565	NA	NA
UHGV-1474830_64	PHROG	phrog_14970	NA	unknown function
UHGV-1474830_64	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-1474830_64	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-1474830_64	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1474830_65	PHROG	phrog_4973	NA	unknown function
UHGV-1474830_65	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1474830_66	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1474830_66	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1474830_66	UniRef90	UniRef90_B8G4U5	Single-stranded DNA-binding protein	NA
UHGV-1474830_66	eggNOG-mapper	326427.Cagg_2703	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1474830_66	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1474830_66	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1474830_66	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1474830_66	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1474830_66	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA