UHGV-1475521

Genome information

vOTU vOTU-022058

Genome length 31,780 bps

CDS count 48

Completeness 77.22% (medium-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-1475521
vOTU ID	vOTU-022058
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0221326
BioSample	SAMEA2338713
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.92
Jumbo phage	No

Genome content
Genome length	31,780 bps
GC content	56.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	88.86%
Average CDS length	590.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1475521_1	eggNOG-mapper	742823.HMPREF9465_00905	Siphovirus Gp157	NA
UHGV-1475521_3	PHROG	phrog_743	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1475521_3	eggNOG-mapper	1524467.IV04_23415	NA	NA
UHGV-1475521_3	Structural annotation	PF05037, MF_00984, NF004512, COG2965	NA	NA
UHGV-1475521_4	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1475521_4	UniRef90	UniRef90_R7IN71	NA	NA
UHGV-1475521_4	eggNOG-mapper	1268622.AVS7_00675	NA	NA
UHGV-1475521_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-1475521_4	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1475521_11	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1475521_11	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1475521_11	UniRef90	UniRef90_UPI0013F65340	LexA family transcriptional regulator	NA
UHGV-1475521_11	eggNOG-mapper	469610.HMPREF0189_01093	Peptidase S24-like	NA
UHGV-1475521_11	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1475521_11	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1475521_11	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1475521_12	UniRef90	UniRef90_A0A1N7QYK3	DNA-binding transcriptional regulator Cro	NA
UHGV-1475521_12	eggNOG-mapper	360910.BAV1437	NA	NA
UHGV-1475521_12	Structural annotation	PF15943, NF007282	NA	NA
UHGV-1475521_13	PHROG	phrog_6451	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-1475521_13	UniRef90	UniRef90_UPI0013F66548	NA	NA
UHGV-1475521_13	eggNOG-mapper	1122604.JONR01000011_gene3586	ORF located using Glimmer RBSfinder	NA
UHGV-1475521_13	Pfam	PF07120	NA	DUF1376
UHGV-1475521_13	COG	COG3756	NA	NA
UHGV-1475521_13	Structural annotation	PF07120, COG3756	NA	NA
UHGV-1475521_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1475521_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1475521_14	UniRef90	UniRef90_A0A139KEI0	IstB-like ATP-binding protein	NA
UHGV-1475521_14	eggNOG-mapper	742823.HMPREF9465_00892	DNA-dependent DNA replication	NA
UHGV-1475521_14	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1475521_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1475521_14	Structural annotation	PF01695, MF_01158, NF005931, COG1484	NA	NA
UHGV-1475521_18	PHROG	phrog_18669	NA	unknown function
UHGV-1475521_18	UniRef90	UniRef90_A0A220RCF2	NA	NA
UHGV-1475521_18	eggNOG-mapper	556268.OFAG_00830	NA	NA
UHGV-1475521_18	Pfam	PF06356	NA	DUF1064
UHGV-1475521_18	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-1475521_19	Structural annotation	PF06530, MF_00245, NF008895, COG2739	NA	NA
UHGV-1475521_20	eggNOG-mapper	742823.HMPREF9465_00880	NA	NA
UHGV-1475521_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1475521_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1475521_21	UniRef90	UniRef90_UPI0005864BBB	HNH endonuclease	NA
UHGV-1475521_21	eggNOG-mapper	279714.FuraDRAFT_0271	HNH endonuclease	NA
UHGV-1475521_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1475521_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1475521_21	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1475521_23	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1475521_23	UniRef90	UniRef90_UPI000DE972B2	phage terminase small subunit P27 family	NA
UHGV-1475521_23	eggNOG-mapper	380358.XALC_2630	Phage terminase, small subunit	NA
UHGV-1475521_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1475521_23	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1475521_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1475521_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1475521_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1475521_24	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-1475521_24	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-1475521_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1475521_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1475521_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1475521_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1475521_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-1475521_25	UniRef90	UniRef90_A0A5B7ZK00	Phage portal protein	NA
UHGV-1475521_25	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-1475521_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1475521_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1475521_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1475521_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1475521_26	KOfam	K06904	NA	NA
UHGV-1475521_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1475521_26	UniRef90	UniRef90_A0A5B7ZLN2	HK97 family phage prohead protease	NA
UHGV-1475521_26	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-1475521_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1475521_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1475521_26	COG	COG3740	Phage head maturation protease	NA
UHGV-1475521_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1475521_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-1475521_27	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-1475521_27	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-1475521_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1475521_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1475521_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1475521_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1475521_28	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1475521_28	UniRef90	UniRef90_A0A6L6YIV6	Phage gp6-like head-tail connector protein	NA
UHGV-1475521_28	eggNOG-mapper	742821.HMPREF9464_01830	Phage gp6-like head-tail connector protein	NA
UHGV-1475521_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1475521_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1475521_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1475521_29	PHROG	phrog_25	head closure Hc1	connector
UHGV-1475521_29	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-1475521_29	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-1475521_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1475521_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1475521_30	PHROG	phrog_209	portal protein	head and packaging
UHGV-1475521_30	UniRef90	UniRef90_Q8HAC7	Sb11	NA
UHGV-1475521_30	eggNOG-mapper	742821.HMPREF9464_01828	NA	NA
UHGV-1475521_30	Structural annotation	PF09646	NA	NA
UHGV-1475521_31	PHROG	phrog_165	tail sheath	tail
UHGV-1475521_31	UniRef90	UniRef90_A0A5B7ZKE4	Phage tail protein	NA
UHGV-1475521_31	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-1475521_31	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1475521_31	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1475521_31	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-1475521_31	Structural annotation	PF10758, COG4386	NA	NA
UHGV-1475521_32	PHROG	phrog_185	tail tube protein	tail
UHGV-1475521_32	UniRef90	UniRef90_A0A7T9CA13	Phage tail tube protein	NA
UHGV-1475521_32	eggNOG-mapper	742821.HMPREF9464_01826	Phage tail tube protein	NA
UHGV-1475521_32	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-1475521_32	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-1475521_33	UniRef90	UniRef90_UPI001EFD42AE	phage tail assembly protein	NA
UHGV-1475521_33	eggNOG-mapper	742821.HMPREF9464_01825	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-1475521_33	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-1475521_33	Structural annotation	PF10109, COG4518	NA	NA
UHGV-1475521_35	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-1475521_35	UniRef90	UniRef90_UPI001BD5BF14	phage tail tape measure protein	NA
UHGV-1475521_35	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-1475521_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1475521_35	COG	COG5283	Phage-related tail protein	NA
UHGV-1475521_35	Structural annotation	TIGR01760	NA	NA
UHGV-1475521_36	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-1475521_36	UniRef90	UniRef90_E7H535	DNA_circ_N domain-containing protein	NA
UHGV-1475521_36	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-1475521_36	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-1475521_36	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-1475521_36	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-1475521_37	PHROG	phrog_177	tail protein	tail
UHGV-1475521_37	UniRef90	UniRef90_A0A2D0IGP6	Baseplate protein	NA
UHGV-1475521_37	eggNOG-mapper	742821.HMPREF9464_01822	Tail protein	NA
UHGV-1475521_37	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-1475521_37	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-1475521_37	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1475521_39	UniRef90	UniRef90_A0A5B7ZKV6	Phage baseplate assembly protein V	NA
UHGV-1475521_39	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-1475521_39	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-1475521_39	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-1475521_39	COG	COG4384	NA	NA
UHGV-1475521_39	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-1475521_40	PHROG	phrog_180	tail protein	tail
UHGV-1475521_40	UniRef90	UniRef90_A0A0N0GNP2	Phage protein GP46	NA
UHGV-1475521_40	eggNOG-mapper	742821.HMPREF9464_01818	Phage protein GP46	NA
UHGV-1475521_40	Pfam	PF07409	NA	GP46
UHGV-1475521_40	COG	COG4381	NA	NA
UHGV-1475521_40	Structural annotation	PF07409, COG4381	NA	NA
UHGV-1475521_41	PHROG	phrog_6	baseplate protein	tail
UHGV-1475521_41	UniRef90	UniRef90_E7H529	Baseplate_J domain-containing protein	NA
UHGV-1475521_41	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-1475521_41	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1475521_41	COG	COG3299	NA	NA
UHGV-1475521_41	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1475521_42	PHROG	phrog_203	tail protein	tail
UHGV-1475521_42	UniRef90	UniRef90_A0A6N9TJ05	NA	NA
UHGV-1475521_42	eggNOG-mapper	742821.HMPREF9464_01816	NA	NA
UHGV-1475521_42	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1475521_42	COG	COG3778	NA	NA
UHGV-1475521_42	Structural annotation	PF10076, COG3778	NA	NA
UHGV-1475521_43	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1475521_43	COG	COG4675	Phage tail collar domain	NA
UHGV-1475521_44	PHROG	phrog_9116	tail protein	tail
UHGV-1475521_44	UniRef90	UniRef90_UPI000DEA0D44	phage tail protein	NA
UHGV-1475521_44	eggNOG-mapper	556269.ACDQ01000006_gene1587	tail collar domain protein	NA
UHGV-1475521_44	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1475521_44	COG	COG4675	Phage tail collar domain	NA
UHGV-1475521_44	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1475521_46	KOfam	K14059	int; integrase	NA
UHGV-1475521_46	PHROG	phrog_1	integrase	integration and excision
UHGV-1475521_46	UniRef90	UniRef90_E7H526	Tyr recombinase domain-containing protein	NA
UHGV-1475521_46	eggNOG-mapper	742821.HMPREF9464_01814	Belongs to the 'phage' integrase family	NA
UHGV-1475521_46	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-1475521_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1475521_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1475521_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1475521_46	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-1475521_47	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-1475521_47	UniRef90	UniRef90_UPI001C3F074F	phage tail assembly chaperone	NA
UHGV-1475521_47	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-1475521_47	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-1475521_47	Structural annotation	PF16778	NA	NA
UHGV-1475521_48	PHROG	phrog_1084	NA	unknown function
UHGV-1475521_48	eggNOG-mapper	742823.HMPREF9465_00200	NA	NA
UHGV-1475521_48	Structural annotation	PF10651, NF032891, COG5456	NA	NA