UHGV-1475526

Genome information

vOTU vOTU-019663

Genome length 31,782 bps

CDS count 57

Completeness 79.88% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-1475526
vOTU ID	vOTU-019663
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0221340
BioSample	SAMN06164584
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.13
Jumbo phage	No

Genome content
Genome length	31,782 bps
GC content	49.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	95.00%
Average CDS length	536.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1475526_1	KOfam	K14059	int; integrase	NA
UHGV-1475526_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1475526_1	UniRef90	UniRef90_R6M673	Putative integrase-phage associated	NA
UHGV-1475526_1	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-1475526_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1475526_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1475526_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1475526_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1475526_2	UniRef90	UniRef90_UPI0015E14526	FxLYD domain-containing protein	NA
UHGV-1475526_2	eggNOG-mapper	877415.JNJQ01000019_gene1779	NA	NA
UHGV-1475526_2	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-1475526_3	PHROG	phrog_87	metallo-protease	other
UHGV-1475526_3	UniRef90	UniRef90_A0A2V2FQD1	Toxin-antitoxin system, toxin component	NA
UHGV-1475526_3	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-1475526_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1475526_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1475526_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1475526_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1475526_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1475526_4	UniRef90	UniRef90_A0A2V2FME6	Transcriptional regulator	NA
UHGV-1475526_4	eggNOG-mapper	864563.HMPREF9166_1835	Helix-turn-helix XRE-family like proteins	NA
UHGV-1475526_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1475526_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1475526_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1475526_5	UniRef90	UniRef90_A0A174QJI6	XRE family transcriptional regulator	NA
UHGV-1475526_5	eggNOG-mapper	478749.BRYFOR_07571	NA	NA
UHGV-1475526_9	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1475526_9	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-1475526_9	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1475526_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1475526_9	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1475526_11	Structural annotation	PF21805	NA	NA
UHGV-1475526_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1475526_13	UniRef90	UniRef90_UPI001C3A3B51	Siphovirus Gp157 family protein	NA
UHGV-1475526_13	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-1475526_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1475526_13	Structural annotation	PF05565	NA	NA
UHGV-1475526_14	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1475526_14	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1475526_14	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1475526_14	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-1475526_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1475526_15	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1475526_15	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-1475526_15	Structural annotation	PF05772	NA	NA
UHGV-1475526_16	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1475526_16	UniRef90	UniRef90_A0A2V2FQC1	HNHc domain-containing protein	NA
UHGV-1475526_16	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-1475526_16	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-1475526_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1475526_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1475526_17	UniRef90	UniRef90_A0A2V2FMD6	Single-stranded DNA-binding protein	NA
UHGV-1475526_17	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1475526_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1475526_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1475526_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1475526_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1475526_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1475526_18	Structural annotation	PF19157	NA	NA
UHGV-1475526_19	PHROG	phrog_15768	NA	unknown function
UHGV-1475526_19	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-1475526_19	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-1475526_19	Structural annotation	PF01475, MF_01819, NF006999, COG0735	NA	NA
UHGV-1475526_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1475526_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1475526_20	UniRef90	UniRef90_A0A1C6HFV4	DNA replication protein	NA
UHGV-1475526_20	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-1475526_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1475526_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1475526_20	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1475526_21	PHROG	phrog_824	NA	unknown function
UHGV-1475526_21	UniRef90	UniRef90_A0A2V2FQB3	VRR-NUC domain-containing protein	NA
UHGV-1475526_21	eggNOG-mapper	1414720.CBYM010000002_gene588	VRR-NUC domain	NA
UHGV-1475526_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1475526_21	Structural annotation	PF08774	NA	NA
UHGV-1475526_23	PHROG	phrog_3301	pyrophosphatase	other
UHGV-1475526_23	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1475526_23	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1475526_23	Structural annotation	COG1694	NA	NA
UHGV-1475526_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1475526_24	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1475526_24	UniRef90	UniRef90_UPI001D069725	DNA cytosine methyltransferase	NA
UHGV-1475526_24	eggNOG-mapper	1304866.K413DRAFT_1208	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1475526_24	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1475526_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1475526_24	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1475526_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1475526_24	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1475526_26	Pfam	PF21805	Imm-5 like putative immunity protein	Imm5_like
UHGV-1475526_26	Structural annotation	PF21805	NA	NA
UHGV-1475526_28	PHROG	phrog_10714	NA	unknown function
UHGV-1475526_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1475526_32	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1475526_33	PHROG	phrog_8680	NA	unknown function
UHGV-1475526_33	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-1475526_33	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1475526_33	Pfam	PF14386	NA	DUF4417
UHGV-1475526_33	Structural annotation	PF14386	NA	NA
UHGV-1475526_35	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-1475526_35	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1475526_35	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-1475526_35	Structural annotation	PF13542	NA	NA
UHGV-1475526_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1475526_36	PHROG	phrog_10250	NA	unknown function
UHGV-1475526_36	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-1475526_36	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1475526_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1475526_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1475526_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-1475526_36	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1475526_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-1475526_37	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1475526_37	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1475526_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1475526_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1475526_38	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1475526_38	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-1475526_38	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1475526_38	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1475526_38	COG	COG2369	NA	NA
UHGV-1475526_38	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1475526_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1475526_39	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-1475526_39	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1475526_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1475526_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1475526_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1475526_40	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1475526_40	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1475526_40	UniRef90	UniRef90_UPI001D0756FD	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1475526_40	eggNOG-mapper	1042156.CXIVA_01880	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1475526_40	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1475526_40	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1475526_40	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1475526_41	UniRef90	UniRef90_A0A173T1A3	YcfA-like protein	NA
UHGV-1475526_41	eggNOG-mapper	1410609.JHVB01000004_gene465	NA	NA
UHGV-1475526_41	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1475526_42	Structural annotation	PF06810	NA	NA
UHGV-1475526_43	PHROG	phrog_267	major head protein	head and packaging
UHGV-1475526_43	UniRef90	UniRef90_F8UBB7	p22 coat protein	NA
UHGV-1475526_43	eggNOG-mapper	673376.F2VHW8_9CAUD	viral capsid	NA
UHGV-1475526_43	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1475526_46	PHROG	phrog_17977	NA	unknown function
UHGV-1475526_46	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1475526_46	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1475526_47	PHROG	phrog_1233	NA	unknown function
UHGV-1475526_47	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-1475526_48	PHROG	phrog_17405	head protein	head and packaging
UHGV-1475526_48	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-1475526_48	Structural annotation	PF11367	NA	NA
UHGV-1475526_49	PHROG	phrog_885	major tail protein	tail
UHGV-1475526_49	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1475526_49	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1475526_49	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1475526_50	PHROG	phrog_18646	NA	unknown function
UHGV-1475526_50	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-1475526_52	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1475526_52	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1475526_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1475526_52	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-1475526_53	PHROG	phrog_36410	NA	unknown function
UHGV-1475526_53	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-1475526_53	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-1475526_53	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1475526_54	PHROG	phrog_538	minor tail protein	tail
UHGV-1475526_54	UniRef90	UniRef90_UPI001EE8FAB7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1475526_54	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-1475526_54	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1475526_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1475526_55	PHROG	phrog_9534	head protein	head and packaging
UHGV-1475526_55	UniRef90	UniRef90_A7GI58	Putative phage structural protein	NA
UHGV-1475526_55	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-1475526_55	Structural annotation	PF21567	NA	NA