UHGV-1476316

Genome information

Genome length 29,932 bps

CDS count 41

Completeness 99.12% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-1476316
vOTU ID	vOTU-061005
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0211052
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.33
Jumbo phage	No

Genome content
Genome length	29,932 bps
GC content	39.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.75%
Average CDS length	679.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1476316_1	KOfam	K14059	int; integrase	NA
UHGV-1476316_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1476316_1	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-1476316_1	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-1476316_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1476316_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1476316_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1476316_1	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1476316_2	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1476316_2	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-1476316_2	UniRef90	UniRef90_A0A1I5GFP8	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-1476316_2	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1476316_2	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1476316_2	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1476316_2	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1476316_3	PHROG	phrog_9418	NA	unknown function
UHGV-1476316_3	eggNOG-mapper	471855.Shel_21720	NA	NA
UHGV-1476316_3	Structural annotation	PF10233	NA	NA
UHGV-1476316_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1476316_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1476316_4	UniRef90	UniRef90_A0A2S0L6F1	HTH cro/C1-type domain-containing protein	NA
UHGV-1476316_4	eggNOG-mapper	936375.HMPREF1152_0654	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1476316_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1476316_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1476316_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1476316_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1476316_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1476316_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1476316_5	UniRef90	UniRef90_A0A350VIS0	Transcriptional regulator	NA
UHGV-1476316_5	eggNOG-mapper	626939.HMPREF9443_00160	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1476316_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1476316_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1476316_7	PHROG	phrog_9607	NA	unknown function
UHGV-1476316_7	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-1476316_7	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-1476316_8	Structural annotation	PF11972, COG3311	NA	NA
UHGV-1476316_9	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1476316_9	PHROG	phrog_19890	NA	unknown function
UHGV-1476316_9	UniRef90	UniRef90_A0A4Q7PUD7	Transglycosylase-like protein with SLT domain	NA
UHGV-1476316_9	eggNOG-mapper	411468.CLOSCI_01470	Transglycosylase SLT domain	NA
UHGV-1476316_9	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1476316_9	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1476316_9	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-1476316_11	UniRef90	UniRef90_UPI001D129DEE	PcfK-like family protein	NA
UHGV-1476316_11	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1476316_11	Structural annotation	PF14058	NA	NA
UHGV-1476316_12	PHROG	phrog_8470	NA	unknown function
UHGV-1476316_12	UniRef90	UniRef90_J6H8Z2	PcfJ-like protein	NA
UHGV-1476316_12	eggNOG-mapper	936375.HMPREF1152_0668	PcfJ-like protein	NA
UHGV-1476316_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1476316_12	Structural annotation	PF14284	NA	NA
UHGV-1476316_13	PHROG	phrog_15609	NA	unknown function
UHGV-1476316_13	UniRef90	UniRef90_A0A845QHI4	NA	NA
UHGV-1476316_13	eggNOG-mapper	936375.HMPREF1152_0669	NA	NA
UHGV-1476316_13	Pfam	PF11300	NA	DUF3102
UHGV-1476316_13	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-1476316_13	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-1476316_14	Structural annotation	NF041909	NA	NA
UHGV-1476316_17	PHROG	phrog_98	NA	unknown function
UHGV-1476316_17	UniRef90	UniRef90_A0A7T3F6X5	YopX domain-containing protein	NA
UHGV-1476316_17	eggNOG-mapper	201846.B5SP14_9CAUD	YopX protein	NA
UHGV-1476316_17	Pfam	PF09643	YopX protein	YopX
UHGV-1476316_17	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1476316_17	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1476316_18	PHROG	phrog_5781	NA	unknown function
UHGV-1476316_18	UniRef90	UniRef90_UPI001F2B45D6	NA	NA
UHGV-1476316_18	eggNOG-mapper	449673.BACSTE_03041	NA	NA
UHGV-1476316_18	Pfam	PF14359	NA	DUF4406
UHGV-1476316_18	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1476316_18	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-1476316_19	PHROG	phrog_25385	NA	unknown function
UHGV-1476316_19	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-1476316_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1476316_20	eggNOG-mapper	936375.HMPREF1152_0670	NA	NA
UHGV-1476316_20	Structural annotation	PF21578	NA	NA
UHGV-1476316_21	PHROG	phrog_11237	NA	unknown function
UHGV-1476316_21	eggNOG-mapper	875454.BAEW01000017_gene1604	NA	NA
UHGV-1476316_21	Structural annotation	TIGR01636	NA	NA
UHGV-1476316_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1476316_22	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1476316_22	UniRef90	UniRef90_UPI0018A90D59	HNH endonuclease	NA
UHGV-1476316_22	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-1476316_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1476316_22	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1476316_23	PHROG	phrog_1066	NA	unknown function
UHGV-1476316_23	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-1476316_23	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1476316_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1476316_24	UniRef90	UniRef90_A0A3D1WME8	Terminase large subunit	NA
UHGV-1476316_24	eggNOG-mapper	1123263.AUKY01000046_gene466	large subunit	NA
UHGV-1476316_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1476316_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1476316_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1476316_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1476316_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-1476316_25	UniRef90	UniRef90_A0A1V5INC9	Phage portal protein	NA
UHGV-1476316_25	eggNOG-mapper	324057.Pjdr2_1541	Phage portal protein	NA
UHGV-1476316_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1476316_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1476316_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1476316_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1476316_26	KOfam	K06904	NA	NA
UHGV-1476316_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1476316_26	UniRef90	UniRef90_A0A841TAC5	HK97 family phage prohead protease	NA
UHGV-1476316_26	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-1476316_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1476316_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1476316_26	COG	COG3740	Phage head maturation protease	NA
UHGV-1476316_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1476316_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-1476316_27	UniRef90	UniRef90_A0A8J6P3N1	Phage major capsid protein	NA
UHGV-1476316_27	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-1476316_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1476316_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1476316_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1476316_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1476316_28	PHROG	phrog_5223	neck protein	connector
UHGV-1476316_28	eggNOG-mapper	411465.PEPMIC_00737	NA	NA
UHGV-1476316_28	Structural annotation	TIGR01560	NA	NA
UHGV-1476316_29	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1476316_29	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-1476316_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1476316_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1476316_30	UniRef90	UniRef90_UPI00148D7FC6	HK97 gp10 family phage protein	NA
UHGV-1476316_30	eggNOG-mapper	644007.C5J967_9CAUD	exonuclease activity	NA
UHGV-1476316_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1476316_31	PHROG	phrog_78	tail terminator	connector
UHGV-1476316_31	UniRef90	UniRef90_E7GJW4	Prophage pi2 protein 38	NA
UHGV-1476316_31	eggNOG-mapper	1033744.CAEL01000029_gene1277	NA	NA
UHGV-1476316_31	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1476316_32	PHROG	phrog_88	major tail protein	tail
UHGV-1476316_32	UniRef90	UniRef90_A0A1T5A006	Phage major tail protein, phi13 family	NA
UHGV-1476316_32	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-1476316_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1476316_32	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1476316_33	PHROG	phrog_709	NA	unknown function
UHGV-1476316_33	eggNOG-mapper	1111134.HMPREF1253_0376	NA	NA
UHGV-1476316_33	Structural annotation	PF11836	NA	NA
UHGV-1476316_34	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1476316_34	UniRef90	UniRef90_V9HUK2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1476316_34	eggNOG-mapper	1123263.AUKY01000046_gene477	Phage tail tape measure protein, TP901 family	NA
UHGV-1476316_34	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1476316_34	Structural annotation	COG5280	NA	NA
UHGV-1476316_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1476316_35	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1476316_36	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-1476316_36	UniRef90	UniRef90_UPI0009F2CE9F	phage tail protein	NA
UHGV-1476316_36	eggNOG-mapper	561177.ANHYDRO_01420	Phage minor structural protein	NA
UHGV-1476316_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1476316_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1476316_36	COG	COG4926	Phage-related protein	NA
UHGV-1476316_37	PHROG	phrog_372	tail protein	tail
UHGV-1476316_37	UniRef90	UniRef90_A0A4D6B7C6	Capsid and scaffold protein	NA
UHGV-1476316_37	eggNOG-mapper	1123315.AUIP01000001_gene1436	NA	NA
UHGV-1476316_37	Pfam	PF05895	NA	DUF859
UHGV-1476316_37	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1476316_38	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1476316_38	Structural annotation	PF11314, PF14600, PF02839	NA	NA
UHGV-1476316_39	PHROG	phrog_4105	NA	unknown function
UHGV-1476316_39	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1476316_39	eggNOG-mapper	1321782.HMPREF1986_02281	NA	NA
UHGV-1476316_40	PHROG	phrog_443	holin	lysis
UHGV-1476316_40	UniRef90	UniRef90_UPI000E3FE0A2	holin	NA
UHGV-1476316_40	eggNOG-mapper	397290.C810_03257	Putative lactococcus lactis phage r1t holin	NA
UHGV-1476316_40	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1476316_40	Structural annotation	PF16945	NA	NA
UHGV-1476316_41	KOfam	K07273	acm; lysozyme	NA
UHGV-1476316_41	PHROG	phrog_291	endolysin	lysis
UHGV-1476316_41	UniRef90	UniRef90_UPI001C447F44	glycoside hydrolase family 25	NA
UHGV-1476316_41	eggNOG-mapper	226185.EF_2086	Glycosyl hydrolases family 25	NA
UHGV-1476316_41	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1476316_41	Pfam	PF04122	ell wall binding domain 2 (CWB2)	CW_binding_2
UHGV-1476316_41	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1476316_41	Structural annotation	PF01183, NF033435, COG3757, COG2247	NA	NA