UHGV-1476505

Genome information

Genome length 29,706 bps

CDS count 48

Completeness 78.27% (medium-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-1476505
vOTU ID	vOTU-022689
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0209763
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.46
Jumbo phage	No

Genome content
Genome length	29,706 bps
GC content	57.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.05%
Average CDS length	586.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1476505_1	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-1476505_4	PHROG	phrog_1629	Ulx-like anti-restriction	moron, auxiliary metabolic gene and host takeover
UHGV-1476505_6	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1476505_6	Structural annotation	NF040910	NA	NA
UHGV-1476505_7	PHROG	phrog_105	tail fiber assembly	tail
UHGV-1476505_7	eggNOG-mapper	1408428.JNJP01000079_gene3366	NA	NA
UHGV-1476505_8	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-1476505_8	UniRef90	UniRef90_A0A3A9HSP0	Tail fiber protein	NA
UHGV-1476505_8	eggNOG-mapper	556269.ACDQ01000003_gene1369	Phage Tail Collar Domain	NA
UHGV-1476505_8	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1476505_8	COG	COG4675	Phage tail collar domain	NA
UHGV-1476505_8	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1476505_9	PHROG	phrog_3342	NA	unknown function
UHGV-1476505_9	UniRef90	UniRef90_UPI0013F666CE	pseudouridine synthase	NA
UHGV-1476505_9	eggNOG-mapper	563192.HMPREF0179_01734	NA	NA
UHGV-1476505_10	PHROG	phrog_1348	tail fiber protein	tail
UHGV-1476505_10	UniRef90	UniRef90_G1UXN0	NA	NA
UHGV-1476505_10	eggNOG-mapper	665942.HMPREF1022_02677	NA	NA
UHGV-1476505_10	Pfam	PF14301	NA	DUF4376
UHGV-1476505_10	Structural annotation	PF14301	NA	NA
UHGV-1476505_12	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1476505_14	PHROG	phrog_13634	NA	unknown function
UHGV-1476505_14	eggNOG-mapper	1238450.VIBNISOn1_1190023	NA	NA
UHGV-1476505_14	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-1476505_15	PHROG	phrog_4287	DNA ejection protein	DNA, RNA and nucleotide metabolism
UHGV-1476505_16	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-1476505_19	Structural annotation	PF15868, NF012201	NA	NA
UHGV-1476505_20	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1476505_20	UniRef90	UniRef90_A0A7S5Y917	Stabilization protein	NA
UHGV-1476505_20	eggNOG-mapper	1380394.JADL01000008_gene3759	NA	NA
UHGV-1476505_20	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1476505_22	PHROG	phrog_240	head protein	head and packaging
UHGV-1476505_22	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-1476505_22	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-1476505_23	PHROG	phrog_2941	virion structural protein	head and packaging
UHGV-1476505_23	UniRef90	UniRef90_A0A1Y0T3P1	Tail tubular protein A	NA
UHGV-1476505_23	eggNOG-mapper	1230476.C207_01170	NA	NA
UHGV-1476505_23	Structural annotation	PF20387	NA	NA
UHGV-1476505_24	PHROG	phrog_3982	NA	unknown function
UHGV-1476505_25	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1476505_25	UniRef90	UniRef90_UPI00097D27EC	NA	NA
UHGV-1476505_25	eggNOG-mapper	1401065.HMPREF2130_10960	NA	NA
UHGV-1476505_25	Pfam	PF17236	NA	DUF5309
UHGV-1476505_25	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-1476505_26	PHROG	phrog_3927	head scaffolding protein	head and packaging
UHGV-1476505_28	PHROG	phrog_1216	portal protein	head and packaging
UHGV-1476505_28	UniRef90	UniRef90_A0A516LL11	Putative portal protein	NA
UHGV-1476505_28	eggNOG-mapper	1380394.JADL01000008_gene3768	Membrane	NA
UHGV-1476505_28	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1476505_28	Structural annotation	PF12236, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1476505_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1476505_29	PHROG	phrog_2472	NA	unknown function
UHGV-1476505_29	UniRef90	UniRef90_UPI00194E96F0	terminase family protein	NA
UHGV-1476505_29	eggNOG-mapper	641491.DND132_2087	Terminase RNaseH-like domain	NA
UHGV-1476505_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1476505_29	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-1476505_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1476505_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1476505_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1476505_30	UniRef90	UniRef90_UPI001786FDCF	terminase small subunit	NA
UHGV-1476505_30	eggNOG-mapper	1316932.MHH_c01510	Terminase small subunit	NA
UHGV-1476505_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1476505_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1476505_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1476505_33	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1476505_33	PHROG	phrog_7	endolysin	lysis
UHGV-1476505_33	UniRef90	UniRef90_UPI0013ED228A	lysozyme	NA
UHGV-1476505_33	eggNOG-mapper	1218075.BAYA01000007_gene2667	Phage lysozyme	NA
UHGV-1476505_33	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1476505_33	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1476505_33	HAMAP	MF_04110	Endolysin	NA
UHGV-1476505_33	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1476505_34	UniRef90	UniRef90_A0A7U4U7J6	WYL domain-containing protein	NA
UHGV-1476505_34	eggNOG-mapper	946077.W5A_13335	regulation of single-species biofilm formation	NA
UHGV-1476505_34	COG	COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	NA
UHGV-1476505_34	Structural annotation	PF13280, NF008636, COG4568	NA	NA
UHGV-1476505_37	eggNOG-mapper	525146.Ddes_0259	NA	NA
UHGV-1476505_37	Structural annotation	PF00544, COG3866	NA	NA
UHGV-1476505_38	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1476505_38	UniRef90	UniRef90_A0A8J6ZAL1	HNH endonuclease	NA
UHGV-1476505_38	eggNOG-mapper	654926.Q8QNG0_ESV1K	HNH endonuclease	NA
UHGV-1476505_38	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1476505_38	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1476505_38	Structural annotation	PF13392	NA	NA
UHGV-1476505_39	PHROG	phrog_419	NA	unknown function
UHGV-1476505_39	UniRef90	UniRef90_A0A3F3A3T2	Gp9	NA
UHGV-1476505_39	eggNOG-mapper	1277892.M1IRA5_9CAUD	NA	NA
UHGV-1476505_39	Structural annotation	PF14083	NA	NA
UHGV-1476505_41	PHROG	phrog_824	NA	unknown function
UHGV-1476505_41	UniRef90	UniRef90_A0A120KLV2	VRR-NUC domain-containing protein	NA
UHGV-1476505_41	eggNOG-mapper	563192.HMPREF0179_01752	VRR_NUC	NA
UHGV-1476505_41	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1476505_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1476505_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1476505_42	UniRef90	UniRef90_UPI000378B16C	single-stranded DNA-binding protein	NA
UHGV-1476505_42	eggNOG-mapper	1121459.AQXE01000010_gene1906	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1476505_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1476505_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1476505_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1476505_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1476505_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1476505_43	PHROG	phrog_10105	NA	unknown function
UHGV-1476505_43	eggNOG-mapper	1127514.H9C0S5_9CAUD	NA	NA
UHGV-1476505_43	Pfam	PF20081	NA	DUF6475
UHGV-1476505_44	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1476505_44	eggNOG-mapper	411464.DESPIG_01302	HNH endonuclease	NA
UHGV-1476505_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1476505_46	PHROG	phrog_6831	transcriptional regulator	transcription regulation
UHGV-1476505_46	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-1476505_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1476505_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1476505_47	UniRef90	UniRef90_E5Y6E7	Peptidase_S24 domain-containing protein	NA
UHGV-1476505_47	eggNOG-mapper	563192.HMPREF0179_01760	sequence-specific DNA binding	NA
UHGV-1476505_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1476505_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1476505_47	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1476505_47	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA