UHGV-1476602

Genome information

Genome length 29,914 bps

CDS count 36

Completeness 81.85% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1476602
vOTU ID	vOTU-035694
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0210952
BioSample	SAMEA2738169
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	76.1
Jumbo phage	No

Genome content
Genome length	29,914 bps
GC content	41.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	94.14%
Average CDS length	783.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1476602_1	eggNOG-mapper	1008453.HMPREF9957_0887	AAA domain, putative AbiEii toxin, Type IV TA system	NA
UHGV-1476602_1	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1476602_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1476602_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1476602_2	UniRef90	UniRef90_A0A0I9AR32	Helix-turn-helix domain-containing protein	NA
UHGV-1476602_2	eggNOG-mapper	157924.Q7Y4M0_9CAUD	sequence-specific DNA binding	NA
UHGV-1476602_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1476602_2	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1476602_3	PHROG	phrog_87	metallo-protease	other
UHGV-1476602_3	UniRef90	UniRef90_A0A139NUT7	Peptidase_M78 domain-containing protein	NA
UHGV-1476602_3	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-1476602_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1476602_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1476602_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1476602_4	PHROG	phrog_4431	NA	unknown function
UHGV-1476602_4	UniRef90	UniRef90_A0A4U9XLP4	NA	NA
UHGV-1476602_4	eggNOG-mapper	866775.HMPREF9243_0895	NA	NA
UHGV-1476602_5	KOfam	K14059	int; integrase	NA
UHGV-1476602_5	PHROG	phrog_1	integrase	integration and excision
UHGV-1476602_5	UniRef90	UniRef90_A0A4D6AVC8	Integrase	NA
UHGV-1476602_5	eggNOG-mapper	12402.Q708S2_9CAUD	Phage integrase family	NA
UHGV-1476602_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1476602_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1476602_5	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1476602_6	KOfam	K07273	acm; lysozyme	NA
UHGV-1476602_6	PHROG	phrog_6745	endolysin	lysis
UHGV-1476602_6	UniRef90	UniRef90_UPI001459BF86	lysozyme	NA
UHGV-1476602_6	eggNOG-mapper	1000588.HMPREF9965_1684	Glycosyl hydrolases family 25	NA
UHGV-1476602_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1476602_6	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-1476602_6	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1476602_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1476602_6	Structural annotation	PF01183, PF19127, TIGR04035, COG5263, COG3757	NA	NA
UHGV-1476602_7	PHROG	phrog_297	holin	lysis
UHGV-1476602_7	UniRef90	UniRef90_E6KJ35	Holin, phage phi LC3 family	NA
UHGV-1476602_7	eggNOG-mapper	888049.HMPREF8578_0250	COG5546 Small integral membrane protein	NA
UHGV-1476602_7	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1476602_7	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1476602_7	COG	COG5546	NA	NA
UHGV-1476602_7	Structural annotation	COG5546	NA	NA
UHGV-1476602_8	PHROG	phrog_4257	NA	unknown function
UHGV-1476602_8	UniRef90	UniRef90_F9PZ52	Conserved domain protein	NA
UHGV-1476602_8	eggNOG-mapper	997830.HMPREF1124_0612	NA	NA
UHGV-1476602_9	PHROG	phrog_1554	NA	unknown function
UHGV-1476602_9	UniRef90	UniRef90_A0A371QFW7	NA	NA
UHGV-1476602_9	eggNOG-mapper	768726.HMPREF9178_1050	NA	NA
UHGV-1476602_9	Pfam	PF07104	NA	DUF1366
UHGV-1476602_9	Structural annotation	PF07104	NA	NA
UHGV-1476602_10	PHROG	phrog_372	tail protein	tail
UHGV-1476602_10	UniRef90	UniRef90_UPI001BD53641	NA	NA
UHGV-1476602_10	eggNOG-mapper	1035189.HMPREF9954_0321	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1476602_10	Pfam	PF05895	NA	DUF859
UHGV-1476602_10	COG	COG4675	Phage tail collar domain	NA
UHGV-1476602_10	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1476602_11	KOfam	K23455	COL8A; collagen type VIII alpha	NA
UHGV-1476602_11	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1476602_11	UniRef90	UniRef90_A0A1X1H8E5	Prophage_tail domain-containing protein	NA
UHGV-1476602_11	eggNOG-mapper	1282664.H354_07745	domain, Protein	NA
UHGV-1476602_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1476602_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1476602_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1476602_11	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1476602_11	Structural annotation	PF14594, PF19081, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-1476602_12	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1476602_12	UniRef90	UniRef90_A0A1X0WME2	Phage tail protein	NA
UHGV-1476602_12	eggNOG-mapper	1035189.HMPREF9954_0319	NA	NA
UHGV-1476602_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1476602_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1476602_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1476602_12	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1476602_13	PHROG	phrog_1204	tail protein	tail
UHGV-1476602_13	UniRef90	UniRef90_A0A3G8F4R4	Putative membrane protein	NA
UHGV-1476602_13	eggNOG-mapper	1277892.M1HNU8_9CAUD	NA	NA
UHGV-1476602_14	PHROG	phrog_706	NA	unknown function
UHGV-1476602_14	UniRef90	UniRef90_UPI000F82D21C	Gp15 family bacteriophage protein	NA
UHGV-1476602_14	eggNOG-mapper	646413.C5IUK2_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-1476602_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1476602_14	Structural annotation	PF06854	NA	NA
UHGV-1476602_15	PHROG	phrog_1061	NA	unknown function
UHGV-1476602_15	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-1476602_15	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-1476602_15	Structural annotation	PF10666	NA	NA
UHGV-1476602_16	PHROG	phrog_820	major tail protein	tail
UHGV-1476602_16	UniRef90	UniRef90_A0A380K6S6	Tail shaft protein	NA
UHGV-1476602_16	eggNOG-mapper	646413.C5IUK0_9CAUD	NA	NA
UHGV-1476602_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1476602_17	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1476602_17	UniRef90	UniRef90_A0A1X1H8I8	Capsid protein	NA
UHGV-1476602_17	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-1476602_17	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1476602_17	Structural annotation	PF12691	NA	NA
UHGV-1476602_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1476602_18	UniRef90	UniRef90_A0A1X1H883	Capsid protein	NA
UHGV-1476602_18	eggNOG-mapper	537874.B3GW08_9CAUD	Minor capsid protein	NA
UHGV-1476602_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1476602_18	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1476602_19	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1476602_19	UniRef90	UniRef90_UPI0007693BA3	putative minor capsid protein	NA
UHGV-1476602_19	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-1476602_19	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1476602_19	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1476602_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1476602_20	UniRef90	UniRef90_A0A150NS05	NA	NA
UHGV-1476602_20	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-1476602_22	PHROG	phrog_2724	NA	unknown function
UHGV-1476602_22	UniRef90	UniRef90_A0A3G8F7I1	Rho_N domain-containing protein	NA
UHGV-1476602_22	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1476602_22	Structural annotation	PF07498	NA	NA
UHGV-1476602_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-1476602_23	UniRef90	UniRef90_A0A4D6ASP8	Main capsid protein	NA
UHGV-1476602_23	eggNOG-mapper	537874.B3GW03_9CAUD	NA	NA
UHGV-1476602_23	Structural annotation	PF20911	NA	NA
UHGV-1476602_24	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1476602_24	UniRef90	UniRef90_A0A150NS01	NA	NA
UHGV-1476602_24	eggNOG-mapper	537874.B3GW02_9CAUD	NA	NA
UHGV-1476602_26	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-1476602_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1476602_26	UniRef90	UniRef90_UPI001C1F0E28	capsid protein	NA
UHGV-1476602_26	eggNOG-mapper	764291.STRUR_2106	Phage minor capsid protein 2	NA
UHGV-1476602_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1476602_26	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1476602_26	COG	COG2369	NA	NA
UHGV-1476602_26	Structural annotation	PF06152, PF03496, NF040688	NA	NA
UHGV-1476602_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-1476602_27	UniRef90	UniRef90_A0A150NRY8	Phage minor capsid protein	NA
UHGV-1476602_27	eggNOG-mapper	537874.B3GW00_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1476602_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1476602_27	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1476602_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1476602_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1476602_28	PHROG	phrog_29775	NA	unknown function
UHGV-1476602_28	UniRef90	UniRef90_A0A150NNE4	Phage terminase large subunit	NA
UHGV-1476602_28	eggNOG-mapper	1214217.ALNF01000014_gene1382	Phage terminase, large subunit, PBSX family	NA
UHGV-1476602_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1476602_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1476602_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1476602_28	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1476602_29	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-1476602_29	UniRef90	UniRef90_A0A1X0WMD3	Terminase	NA
UHGV-1476602_29	eggNOG-mapper	764299.STRIC_2523	DNA packaging	NA
UHGV-1476602_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1476602_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1476602_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1476602_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1476602_30	UniRef90	UniRef90_A0A139QHN6	NA	NA
UHGV-1476602_30	eggNOG-mapper	1214217.ALNF01000014_gene1384	NA	NA
UHGV-1476602_30	Pfam	PF07374	NA	DUF1492
UHGV-1476602_30	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-1476602_31	PHROG	phrog_4455	NA	unknown function
UHGV-1476602_31	UniRef90	UniRef90_A0A4J2CRE4	NA	NA
UHGV-1476602_32	PHROG	phrog_17529	NA	unknown function
UHGV-1476602_32	UniRef90	UniRef90_Q7Y4J4	Gp30	NA
UHGV-1476602_32	eggNOG-mapper	585203.SMSK564_1294	SPFH domain / Band 7 family	NA
UHGV-1476602_32	AcrCatalog	cluster_31176	NA	NA
UHGV-1476602_32	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1476602_33	PHROG	phrog_3476	NA	unknown function
UHGV-1476602_33	UniRef90	UniRef90_E8ZDM2	NA	NA
UHGV-1476602_34	PHROG	phrog_98	NA	unknown function
UHGV-1476602_34	UniRef90	UniRef90_A0A1X1IKX5	YopX domain-containing protein	NA
UHGV-1476602_34	eggNOG-mapper	768486.EHR_02675	YopX protein	NA
UHGV-1476602_34	Pfam	PF09643	YopX protein	YopX
UHGV-1476602_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1476602_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1476602_35	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-1476602_35	UniRef90	UniRef90_A0A0A0YRU9	DNA-binding protein	NA
UHGV-1476602_35	eggNOG-mapper	1297534.CAUJ01000005_gene196	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1476602_35	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1476602_35	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1476602_35	Structural annotation	PF08761, MF_01020, NF007113, COG4508	NA	NA
UHGV-1476602_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1476602_36	PHROG	phrog_26324	DNA methyltransferase	other
UHGV-1476602_36	UniRef90	UniRef90_UPI00066A25F3	DNA cytosine methyltransferase	NA
UHGV-1476602_36	eggNOG-mapper	365659.smi_0434	C-5 cytosine-specific DNA methylase	NA
UHGV-1476602_36	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-1476602_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1476602_36	COG	COG0270	DNA-cytosine methylase	NA