UHGV-1476973

Genome information

Genome length 18,415 bps

CDS count 27

Completeness 50.33% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1476973
vOTU ID	vOTU-035701
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0132041
BioSample	SAMEA2738008
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.56
Jumbo phage	No

Genome content
Genome length	18,415 bps
GC content	37.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	96.10%
Average CDS length	659.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1476973_1	PHROG	phrog_372	tail protein	tail
UHGV-1476973_1	UniRef90	UniRef90_UPI000B32F295	NA	NA
UHGV-1476973_1	eggNOG-mapper	638301.HMPREF0444_1495	NA	NA
UHGV-1476973_1	Pfam	PF05895	NA	DUF859
UHGV-1476973_1	Structural annotation	PF02010, MF_04116, NF032891, COG1470	NA	NA
UHGV-1476973_2	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1476973_2	UniRef90	UniRef90_UPI001C3C3E26	phage tail protein	NA
UHGV-1476973_2	eggNOG-mapper	638301.HMPREF0444_1496	Prophage endopeptidase tail	NA
UHGV-1476973_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1476973_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1476973_2	COG	COG4926	Phage-related protein	NA
UHGV-1476973_2	Structural annotation	PF14594, PF21602, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-1476973_3	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1476973_3	UniRef90	UniRef90_UPI0008A170C3	phage tail family protein	NA
UHGV-1476973_3	eggNOG-mapper	883110.HMPREF9260_00649	Phage tail protein	NA
UHGV-1476973_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1476973_3	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1476973_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-1476973_3	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1476973_4	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1476973_4	UniRef90	UniRef90_A0A6M1KN62	Phage tail tape measure protein	NA
UHGV-1476973_4	eggNOG-mapper	764299.STRIC_1430	phage tail tape measure protein	NA
UHGV-1476973_4	Pfam	PF12699	phiKZ-like phage internal head proteins	phiKZ_IP
UHGV-1476973_4	COG	COG5412	Phage-related protein	NA
UHGV-1476973_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1476973_5	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-1476973_5	UniRef90	UniRef90_A0A072YFE9	Peptide methionine sulfoxide reductase	NA
UHGV-1476973_5	eggNOG-mapper	1443125.Z962_05600	NA	NA
UHGV-1476973_6	PHROG	phrog_1021	NA	unknown function
UHGV-1476973_6	UniRef90	UniRef90_A0A098ANQ0	Putative prophage protein	NA
UHGV-1476973_6	eggNOG-mapper	1140001.I571_01841	NA	NA
UHGV-1476973_7	PHROG	phrog_885	major tail protein	tail
UHGV-1476973_7	UniRef90	UniRef90_A0A098ANP7	Putative prophage protein	NA
UHGV-1476973_7	eggNOG-mapper	764299.STRIC_1433	NA	NA
UHGV-1476973_7	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1476973_8	PHROG	phrog_957	head protein	head and packaging
UHGV-1476973_8	eggNOG-mapper	1260356.D920_00144	NA	NA
UHGV-1476973_8	Structural annotation	PF11367	NA	NA
UHGV-1476973_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1476973_9	UniRef90	UniRef90_A0A8F2U2S5	HK97 gp10 family phage protein	NA
UHGV-1476973_9	eggNOG-mapper	1140001.I571_01837	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1476973_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1476973_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1476973_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1476973_10	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-1476973_10	UniRef90	UniRef90_A0A8F2U2Q5	Phage head closure protein	NA
UHGV-1476973_10	eggNOG-mapper	226185.EF_0342	NA	NA
UHGV-1476973_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1476973_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1476973_11	PHROG	phrog_1236	head protein	head and packaging
UHGV-1476973_11	UniRef90	UniRef90_A0A098AQ51	Putative prophage protein	NA
UHGV-1476973_11	eggNOG-mapper	673839.D2J063_9CAUD	NA	NA
UHGV-1476973_11	Structural annotation	PF05135	NA	NA
UHGV-1476973_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-1476973_13	UniRef90	UniRef90_A0A098ANP2	Putative prophage protein	NA
UHGV-1476973_13	eggNOG-mapper	1123489.AUAN01000010_gene359	NA	NA
UHGV-1476973_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1476973_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1476973_14	UniRef90	UniRef90_UPI001CC9815F	phage scaffolding protein	NA
UHGV-1476973_14	eggNOG-mapper	1140001.I571_01833	Phage minor structural protein GP20	NA
UHGV-1476973_14	Structural annotation	PF06810	NA	NA
UHGV-1476973_16	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1476973_16	UniRef90	UniRef90_UPI0010F72FCA	head protein	NA
UHGV-1476973_16	eggNOG-mapper	1123309.AQYB01000018_gene805	Phage Mu protein F like protein	NA
UHGV-1476973_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1476973_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1476973_16	COG	COG2369	NA	NA
UHGV-1476973_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1476973_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-1476973_17	UniRef90	UniRef90_A0A6G1NBF8	Phage portal protein	NA
UHGV-1476973_17	eggNOG-mapper	673839.D2J056_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1476973_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1476973_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1476973_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1476973_18	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1476973_18	UniRef90	UniRef90_UPI0011A3F9A4	PBSX family phage terminase large subunit	NA
UHGV-1476973_18	eggNOG-mapper	416870.llmg_0825	Terminase-like family	NA
UHGV-1476973_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1476973_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1476973_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-1476973_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1476973_19	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-1476973_19	UniRef90	UniRef90_UPI0012458216	terminase small subunit	NA
UHGV-1476973_19	eggNOG-mapper	764299.STRIC_2523	DNA packaging	NA
UHGV-1476973_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1476973_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1476973_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1476973_20	UniRef90	UniRef90_A0A0U3P173	Integrase regulator RinA	NA
UHGV-1476973_20	eggNOG-mapper	1295642.H839_08234	NA	NA
UHGV-1476973_20	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1476973_20	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1476973_25	PHROG	phrog_4074	NA	unknown function
UHGV-1476973_25	UniRef90	UniRef90_Q928D3	Lin2603 protein	NA
UHGV-1476973_25	eggNOG-mapper	272626.lin2411	NA	NA