UHGV-1477485

Genome information

Genome length 31,719 bps

CDS count 45

Completeness 73.34% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1477485
vOTU ID	vOTU-035713
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0220962
BioSample	SAMEA4545380
Country	Kazakhstan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.41
Jumbo phage	No

Genome content
Genome length	31,719 bps
GC content	50.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.42%
Average CDS length	668.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1477485_1	Structural annotation	PF12510	NA	NA
UHGV-1477485_2	PHROG	phrog_20016	NA	unknown function
UHGV-1477485_2	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1477485_2	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1477485_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1477485_3	PHROG	phrog_16490	NA	unknown function
UHGV-1477485_3	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1477485_5	PHROG	phrog_21718	NA	unknown function
UHGV-1477485_5	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1477485_6	PHROG	phrog_3754	NA	unknown function
UHGV-1477485_6	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1477485_7	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1477485_8	PHROG	phrog_10091	holin	lysis
UHGV-1477485_8	UniRef90	UniRef90_A0A1Y4RHF4	Phage holin	NA
UHGV-1477485_8	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-1477485_8	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1477485_8	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1477485_8	COG	COG5546	NA	NA
UHGV-1477485_8	Structural annotation	COG5546	NA	NA
UHGV-1477485_9	PHROG	phrog_1863	NA	unknown function
UHGV-1477485_9	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-1477485_10	PHROG	phrog_21357	endolysin	lysis
UHGV-1477485_10	UniRef90	UniRef90_UPI001BB47323	CHAP domain-containing protein	NA
UHGV-1477485_10	eggNOG-mapper	693746.OBV_22650	CHAP domain	NA
UHGV-1477485_10	Pfam	PF05257	CHAP domain	CHAP
UHGV-1477485_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1477485_10	Structural annotation	TIGR02594, COG3738	NA	NA
UHGV-1477485_11	PHROG	phrog_13589	NA	unknown function
UHGV-1477485_11	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1477485_12	PHROG	phrog_31538	NA	unknown function
UHGV-1477485_13	PHROG	phrog_2712	tail fiber protein	tail
UHGV-1477485_14	PHROG	phrog_19111	NA	unknown function
UHGV-1477485_14	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-1477485_14	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1477485_16	PHROG	phrog_15594	NA	unknown function
UHGV-1477485_16	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1477485_16	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1477485_17	PHROG	phrog_22978	NA	unknown function
UHGV-1477485_17	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1477485_18	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-1477485_18	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1477485_20	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1477485_20	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-1477485_20	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1477485_21	PHROG	phrog_12105	NA	unknown function
UHGV-1477485_21	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-1477485_22	PHROG	phrog_15239	NA	unknown function
UHGV-1477485_23	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1477485_23	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-1477485_23	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1477485_23	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1477485_23	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1477485_24	PHROG	phrog_13908	NA	unknown function
UHGV-1477485_24	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1477485_25	KOfam	K07584	NA	NA
UHGV-1477485_25	PHROG	phrog_4478	peptidase	other
UHGV-1477485_25	UniRef90	UniRef90_A0A6N9P4C8	Ribosomal-processing cysteine protease Prp	NA
UHGV-1477485_25	eggNOG-mapper	944564.HMPREF9200_1505	Cysteine protease Prp	NA
UHGV-1477485_25	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1477485_25	COG	COG2868	NA	NA
UHGV-1477485_25	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-1477485_26	PHROG	phrog_156	portal protein	head and packaging
UHGV-1477485_26	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1477485_26	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1477485_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1477485_27	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1477485_27	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-1477485_27	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1477485_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1477485_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-1477485_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1477485_28	UniRef90	UniRef90_A0A3C0NNN3	HTH psq-type domain-containing protein	NA
UHGV-1477485_29	PHROG	phrog_4973	NA	unknown function
UHGV-1477485_29	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-1477485_29	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1477485_29	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1477485_32	PHROG	phrog_18716	NA	unknown function
UHGV-1477485_32	UniRef90	UniRef90_A0A1J0GJP7	NA	NA
UHGV-1477485_32	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-1477485_32	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1477485_32	Structural annotation	PF18909	NA	NA
UHGV-1477485_41	PHROG	phrog_924	NA	unknown function
UHGV-1477485_41	UniRef90	UniRef90_UPI0011A6BAA7	NA	NA
UHGV-1477485_41	Pfam	PF04448	NA	DUF551
UHGV-1477485_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1477485_43	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1477485_43	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-1477485_43	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1477485_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1477485_43	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1477485_44	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1477485_44	PHROG	phrog_30550	NA	unknown function
UHGV-1477485_44	UniRef90	UniRef90_A0A6N9PX25	Cell wall hydrolase	NA
UHGV-1477485_44	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-1477485_44	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1477485_44	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-1477485_45	PHROG	phrog_27197	NA	unknown function
UHGV-1477485_45	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-1477485_45	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1477485_45	Structural annotation	NF007410	NA	NA