UHGV-1477966

Genome information

Genome length 31,913 bps

CDS count 50

Completeness 89.04% (medium-quality)

geNomad score 0.9478

Prediction confidence Confident

Genome information
Genome ID	UHGV-1477966
vOTU ID	vOTU-025247
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0222079
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9478
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.58
Jumbo phage	No

Genome content
Genome length	31,913 bps
GC content	28.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.88%
Average CDS length	583.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1477966_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1477966_3	PHROG	phrog_670	endolysin	lysis
UHGV-1477966_3	UniRef90	UniRef90_A0A6N8U4Y3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1477966_3	eggNOG-mapper	1117379.BABA_01345	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-1477966_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1477966_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1477966_3	Structural annotation	PF01510, PF16775, MF_04111, COG5632	NA	NA
UHGV-1477966_5	PHROG	phrog_199	holin	lysis
UHGV-1477966_5	UniRef90	UniRef90_UPI001E4FA8BC	phage holin family protein	NA
UHGV-1477966_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1477966_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1477966_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1477966_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1477966_7	PHROG	phrog_2712	tail fiber protein	tail
UHGV-1477966_7	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1477966_7	Structural annotation	PF09458, NF012201	NA	NA
UHGV-1477966_9	PHROG	phrog_1220	head protein	head and packaging
UHGV-1477966_9	UniRef90	UniRef90_R5M2M1	Conserved domain protein	NA
UHGV-1477966_9	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-1477966_9	Structural annotation	PF20747, PF02839	NA	NA
UHGV-1477966_10	PHROG	phrog_538	minor tail protein	tail
UHGV-1477966_10	UniRef90	UniRef90_UPI001EE8FAB7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1477966_10	eggNOG-mapper	394503.Ccel_0826	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1477966_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1477966_10	Structural annotation	PF14594, PF14870, MF_01348, TIGR01665, NF010237, COG4926, COG4447	NA	NA
UHGV-1477966_11	PHROG	phrog_36410	NA	unknown function
UHGV-1477966_11	UniRef90	UniRef90_R5LJU7	Putative phage tail protein	NA
UHGV-1477966_11	eggNOG-mapper	1211817.CCAT010000079_gene1379	Phage tail protein	NA
UHGV-1477966_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1477966_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-1477966_11	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1477966_12	PHROG	phrog_5218	NA	unknown function
UHGV-1477966_12	UniRef90	UniRef90_R5LPM2	Phage tail tape measure protein TP901 family	NA
UHGV-1477966_12	eggNOG-mapper	565664.EFXG_02652	Phage-related minor tail protein	NA
UHGV-1477966_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1477966_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1477966_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1477966_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1477966_13	Structural annotation	PF11836	NA	NA
UHGV-1477966_14	PHROG	phrog_88	major tail protein	tail
UHGV-1477966_14	UniRef90	UniRef90_R5M2L7	Phi13 family phage major tail protein	NA
UHGV-1477966_14	eggNOG-mapper	1460635.JCM19038_2812	phage major tail protein, phi13 family	NA
UHGV-1477966_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1477966_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1477966_15	UniRef90	UniRef90_R5M285	Phage protein HK97 gp10 family	NA
UHGV-1477966_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1477966_15	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1477966_16	Structural annotation	PF05657	NA	NA
UHGV-1477966_17	UniRef90	UniRef90_A0A7C6J040	Phage head closure protein	NA
UHGV-1477966_19	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-1477966_19	UniRef90	UniRef90_UPI00133030EC	Rho termination factor N-terminal domain-containing protein	NA
UHGV-1477966_19	eggNOG-mapper	1141106.CAIB01000128_gene1066	NA	NA
UHGV-1477966_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-1477966_20	UniRef90	UniRef90_R5M278	Phage capsid family	NA
UHGV-1477966_20	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1477966_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1477966_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1477966_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1477966_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1477966_21	UniRef90	UniRef90_R5LJT6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1477966_21	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1477966_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1477966_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1477966_21	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1477966_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-1477966_22	UniRef90	UniRef90_R5LPL0	Phage portal protein	NA
UHGV-1477966_22	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1477966_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1477966_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1477966_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1477966_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1477966_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1477966_23	UniRef90	UniRef90_R5LJQ4	Phage terminase-like protein large subunit	NA
UHGV-1477966_23	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1477966_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1477966_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1477966_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1477966_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1477966_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1477966_24	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1477966_24	eggNOG-mapper	1235798.C817_02582	NA	NA
UHGV-1477966_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1477966_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1477966_25	UniRef90	UniRef90_R5M272	HNH endonuclease	NA
UHGV-1477966_25	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-1477966_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1477966_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1477966_26	UniRef90	UniRef90_R6SME5	DNA-directed RNA polymerase specialized sigma subunit sigma24	NA
UHGV-1477966_26	eggNOG-mapper	1211817.CCAT010000013_gene3191	DNA-templated transcription, initiation	NA
UHGV-1477966_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1477966_26	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1477966_36	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1477966_36	PHROG	phrog_1	integrase	integration and excision
UHGV-1477966_36	UniRef90	UniRef90_A0A1M7NLW3	Site-specific recombinase XerD	NA
UHGV-1477966_36	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1477966_36	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1477966_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1477966_36	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1477966_36	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1477966_37	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-1477966_37	UniRef90	UniRef90_A0A7X6YTX1	Putative septation protein SpoVG	NA
UHGV-1477966_37	eggNOG-mapper	334413.FMG_0873	Could be involved in septation	NA
UHGV-1477966_37	Pfam	PF04026	SpoVG	SpoVG
UHGV-1477966_37	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-1477966_37	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-1477966_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1477966_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1477966_40	UniRef90	UniRef90_R5LJR5	SF4 helicase domain-containing protein	NA
UHGV-1477966_40	eggNOG-mapper	1232449.BAHV02000016_gene1835	Participates in initiation and elongation during chromosome replication	NA
UHGV-1477966_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1477966_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1477966_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-1477966_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1477966_41	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1477966_41	PHROG	phrog_15768	NA	unknown function
UHGV-1477966_41	eggNOG-mapper	1122146.AUHP01000011_gene290	DnaD domain protein	NA
UHGV-1477966_41	Pfam	PF19808	NA	DUF6291
UHGV-1477966_41	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1477966_41	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1477966_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1477966_44	UniRef90	UniRef90_R5A161	Helix-turn-helix domain protein	NA
UHGV-1477966_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1477966_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1477966_44	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-1477966_45	UniRef90	UniRef90_R5A425	DNA-binding helix-turn-helix protein	NA
UHGV-1477966_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1477966_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1477966_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1477966_47	KOfam	K14059	int; integrase	NA
UHGV-1477966_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1477966_47	UniRef90	UniRef90_R5LPI4	Tyr recombinase domain-containing protein	NA
UHGV-1477966_47	eggNOG-mapper	428127.EUBDOL_01497	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1477966_47	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1477966_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1477966_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1477966_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1477966_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1477966_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1477966_49	PHROG	phrog_95	integrase	integration and excision
UHGV-1477966_49	UniRef90	UniRef90_R5T1G6	Lin1231 protein	NA
UHGV-1477966_49	eggNOG-mapper	272626.lin1231	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1477966_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1477966_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-1477966_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1477966_49	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1477966_50	PHROG	phrog_24764	NA	unknown function
UHGV-1477966_50	UniRef90	UniRef90_A0A3D2M9Q1	TnpV protein	NA
UHGV-1477966_50	eggNOG-mapper	397288.C806_05048	Transposon-encoded protein TnpV	NA
UHGV-1477966_50	Pfam	PF14198	Transposon-encoded protein TnpV	TnpV
UHGV-1477966_50	Structural annotation	PF14198	NA	NA