UHGV-1477998

Genome information

Genome length 29,583 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-1477998
vOTU ID	vOTU-058421
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0209863
BioSample	SAMN05414975
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.37
Jumbo phage	No

Genome content
Genome length	29,583 bps
GC content	61.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.15%
Average CDS length	570.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1477998_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1477998_5	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1477998_5	UniRef90	UniRef90_A0A1Y4G845	Terminase_3 domain-containing protein	NA
UHGV-1477998_5	eggNOG-mapper	1273103.NM10_06806	Phage terminase large subunit	NA
UHGV-1477998_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1477998_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1477998_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-1477998_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-1477998_6	UniRef90	UniRef90_UPI000DF7AA34	phage portal protein	NA
UHGV-1477998_6	eggNOG-mapper	661087.HMPREF1008_00894	phage minor capsid protein	NA
UHGV-1477998_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1477998_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1477998_7	UniRef90	UniRef90_UPI0003ADCFD0	phage capsid protein	NA
UHGV-1477998_7	eggNOG-mapper	1111121.HMPREF1247_0842	Phage minor capsid protein 2	NA
UHGV-1477998_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1477998_7	COG	COG2369	NA	NA
UHGV-1477998_9	PHROG	phrog_585	NA	unknown function
UHGV-1477998_9	UniRef90	UniRef90_A0A7L9UIH6	NA	NA
UHGV-1477998_9	eggNOG-mapper	1437610.BREU_1386	NA	NA
UHGV-1477998_9	Pfam	PF10711	NA	DUF2513
UHGV-1477998_9	Structural annotation	PF10711, TIGR03433, COG3355	NA	NA
UHGV-1477998_10	PHROG	phrog_3675	NA	unknown function
UHGV-1477998_10	UniRef90	UniRef90_A0A3N0I0X7	Dihydrolipoyl dehydrogenase	NA
UHGV-1477998_10	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-1477998_10	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1477998_10	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1477998_11	PHROG	phrog_3675	NA	unknown function
UHGV-1477998_11	eggNOG-mapper	469378.Ccur_02770	YjcQ protein	NA
UHGV-1477998_11	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1477998_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1477998_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1477998_13	UniRef90	UniRef90_A0A252F729	Bro-N domain-containing protein	NA
UHGV-1477998_13	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-1477998_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1477998_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1477998_13	COG	COG3617	Prophage antirepressor	NA
UHGV-1477998_13	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1477998_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1477998_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1477998_15	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1477998_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-1477998_16	UniRef90	UniRef90_R9C6R9	NA	NA
UHGV-1477998_16	eggNOG-mapper	673832.D2IYW7_9CAUD	NA	NA
UHGV-1477998_16	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1477998_18	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1477998_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1477998_19	UniRef90	UniRef90_UPI0010F90370	minor capsid protein	NA
UHGV-1477998_19	eggNOG-mapper	1214217.ALNF01000014_gene1371	Minor capsid protein	NA
UHGV-1477998_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1477998_19	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1477998_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1477998_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1477998_22	Structural annotation	PF10666	NA	NA
UHGV-1477998_23	Structural annotation	PF10666	NA	NA
UHGV-1477998_24	PHROG	phrog_706	NA	unknown function
UHGV-1477998_24	UniRef90	UniRef90_D6E8T4	Bacteriophage Gp15 protein	NA
UHGV-1477998_24	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-1477998_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1477998_24	Structural annotation	PF06854	NA	NA
UHGV-1477998_25	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1477998_25	eggNOG-mapper	401473.BDP_1472	phage tail tape measure protein	NA
UHGV-1477998_25	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1477998_25	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1477998_25	COG	COG5412	Phage-related protein	NA
UHGV-1477998_25	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-1477998_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1477998_26	UniRef90	UniRef90_UPI001F242491	phage tail family protein	NA
UHGV-1477998_26	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-1477998_26	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1477998_27	PHROG	phrog_538	minor tail protein	tail
UHGV-1477998_27	UniRef90	UniRef90_A0A087E4D2	Phage head fiber protein	NA
UHGV-1477998_27	eggNOG-mapper	1111121.HMPREF1247_0853	NA	NA
UHGV-1477998_27	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1477998_28	PHROG	phrog_13141	NA	unknown function
UHGV-1477998_28	UniRef90	UniRef90_A0A087E4D0	Phage-related putative tail protein	NA
UHGV-1477998_28	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-1477998_28	Structural annotation	PF20747	NA	NA
UHGV-1477998_31	KOfam	K14059	int; integrase	NA
UHGV-1477998_31	PHROG	phrog_1	integrase	integration and excision
UHGV-1477998_31	UniRef90	UniRef90_A0A7C8BRC2	Site-specific integrase	NA
UHGV-1477998_31	eggNOG-mapper	1235794.C811_01388	Belongs to the 'phage' integrase family	NA
UHGV-1477998_31	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1477998_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1477998_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1477998_31	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1477998_32	PHROG	phrog_4105	NA	unknown function
UHGV-1477998_32	UniRef90	UniRef90_A0A087A0L5	Phage minor structural protein	NA
UHGV-1477998_32	eggNOG-mapper	218140.BPSY_0948	NA	NA
UHGV-1477998_33	PHROG	phrog_881	holin	lysis
UHGV-1477998_33	UniRef90	UniRef90_A0A3N0I958	Holin	NA
UHGV-1477998_33	eggNOG-mapper	326426.Bbr_0299	Putative phage holin Dp-1	NA
UHGV-1477998_33	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1477998_33	Structural annotation	PF16938	NA	NA
UHGV-1477998_34	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1477998_34	PHROG	phrog_2338	endolysin	lysis
UHGV-1477998_34	UniRef90	UniRef90_A0A3N0I9E4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1477998_34	eggNOG-mapper	1120979.ATVB01000018_gene1391	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1477998_34	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1477998_34	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1477998_34	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1477998_34	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-1477998_35	KOfam	K14059	int; integrase	NA
UHGV-1477998_35	PHROG	phrog_1	integrase	integration and excision
UHGV-1477998_35	UniRef90	UniRef90_A0A2K2UBR2	Tyr recombinase domain-containing protein	NA
UHGV-1477998_35	eggNOG-mapper	1089553.Tph_c21970	Belongs to the 'phage' integrase family	NA
UHGV-1477998_35	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1477998_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1477998_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1477998_35	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1477998_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1477998_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1477998_36	UniRef90	UniRef90_A0A1Q6E4H7	HTH cro/C1-type domain-containing protein	NA
UHGV-1477998_36	eggNOG-mapper	268407.PWYN_03190	Peptidase S24-like	NA
UHGV-1477998_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1477998_36	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1477998_36	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1477998_36	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1477998_39	UniRef90	UniRef90_A0A3N0ATF1	HTH_17 domain-containing protein	NA
UHGV-1477998_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1477998_39	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1477998_41	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1477998_41	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1477998_41	UniRef90	UniRef90_R7BNY6	Endodeoxyribonuclease RusA	NA
UHGV-1477998_41	eggNOG-mapper	479437.Elen_2598	Endodeoxyribonuclease RusA	NA
UHGV-1477998_41	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1477998_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1477998_41	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1477998_42	eggNOG-mapper	479437.Elen_2599	NA	NA
UHGV-1477998_44	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1477998_44	UniRef90	UniRef90_R9KXC5	Phage recombination protein Bet	NA
UHGV-1477998_44	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-1477998_44	Pfam	PF03837	RecT family	RecT
UHGV-1477998_44	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1477998_44	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1477998_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1477998_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1477998_46	UniRef90	UniRef90_R7ANG4	Single-stranded DNA-binding protein	NA
UHGV-1477998_46	eggNOG-mapper	469378.Ccur_11550	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1477998_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1477998_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1477998_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1477998_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1477998_46	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1477998_47	PHROG	phrog_15768	NA	unknown function
UHGV-1477998_47	eggNOG-mapper	521003.COLINT_02319	HNH endonuclease	NA
UHGV-1477998_47	Pfam	PF19808	NA	DUF6291
UHGV-1477998_47	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA