UHGV-1478517

Genome information

Genome length 31,885 bps

CDS count 50

Completeness 72.88% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1478517
vOTU ID	vOTU-025453
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0221913
BioSample	SAMEA2150234
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.28
Jumbo phage	No

Genome content
Genome length	31,885 bps
GC content	53.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	88.13%
Average CDS length	567.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1478517_1	PHROG	phrog_19280	NA	unknown function
UHGV-1478517_2	Structural annotation	PF09931	NA	NA
UHGV-1478517_4	UniRef90	UniRef90_K1UCK4	Phage minor structural protein	NA
UHGV-1478517_4	eggNOG-mapper	1536769.P40081_01145	Prophage endopeptidase tail	NA
UHGV-1478517_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1478517_4	COG	COG4926	Phage-related protein	NA
UHGV-1478517_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1478517_5	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-1478517_6	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1478517_6	UniRef90	UniRef90_A0A6M1KN62	Phage tail tape measure protein	NA
UHGV-1478517_6	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-1478517_6	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-1478517_8	PHROG	phrog_18646	NA	unknown function
UHGV-1478517_8	eggNOG-mapper	1121936.AUHI01000017_gene750	NA	NA
UHGV-1478517_9	PHROG	phrog_885	major tail protein	tail
UHGV-1478517_9	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-1478517_9	eggNOG-mapper	411465.PEPMIC_00741	NA	NA
UHGV-1478517_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1478517_10	PHROG	phrog_17405	head protein	head and packaging
UHGV-1478517_10	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-1478517_10	Structural annotation	PF11367	NA	NA
UHGV-1478517_11	PHROG	phrog_17977	NA	unknown function
UHGV-1478517_11	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1478517_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1478517_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1478517_13	PHROG	phrog_544	major head protein	head and packaging
UHGV-1478517_13	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1478517_13	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1478517_13	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1478517_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1478517_14	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1478517_14	Structural annotation	PF06810	NA	NA
UHGV-1478517_16	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1478517_16	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-1478517_16	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1478517_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1478517_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1478517_16	COG	COG2369	NA	NA
UHGV-1478517_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1478517_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-1478517_17	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1478517_17	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1478517_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1478517_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1478517_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1478517_18	PHROG	phrog_10250	NA	unknown function
UHGV-1478517_18	UniRef90	UniRef90_A0A2N2CXF0	PBSX family phage terminase large subunit	NA
UHGV-1478517_18	eggNOG-mapper	1032362.F6K8Q6_9CAUD	DNA packaging	NA
UHGV-1478517_18	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1478517_18	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1478517_19	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-1478517_19	eggNOG-mapper	349966.DJ58_2661	Terminase small subunit	NA
UHGV-1478517_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1478517_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1478517_21	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1478517_21	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-1478517_21	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-1478517_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1478517_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1478517_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1478517_21	COG	COG0863	DNA modification methylase	NA
UHGV-1478517_21	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1478517_22	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1478517_28	Structural annotation	NF041588	NA	NA
UHGV-1478517_29	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1478517_29	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1478517_29	UniRef90	UniRef90_A0A1Q6PWT9	PAPS_reduct domain-containing protein	NA
UHGV-1478517_29	eggNOG-mapper	742733.HMPREF9469_00225	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1478517_29	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1478517_29	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1478517_29	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1478517_31	UniRef90	UniRef90_A0A662SF09	MazG domain-containing protein	NA
UHGV-1478517_31	eggNOG-mapper	272562.CA_C1930	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1478517_31	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1478517_31	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1478517_31	Structural annotation	COG1694	NA	NA
UHGV-1478517_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1478517_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1478517_32	UniRef90	UniRef90_A0A1Q6Q4S4	Single-stranded DNA-binding protein	NA
UHGV-1478517_32	eggNOG-mapper	1321781.HMPREF1985_01487	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1478517_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1478517_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1478517_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1478517_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1478517_32	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1478517_33	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1478517_33	UniRef90	UniRef90_UPI00195D7EE2	helix-turn-helix transcriptional regulator	NA
UHGV-1478517_33	eggNOG-mapper	476272.RUMHYD_03617	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1478517_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1478517_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1478517_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1478517_34	PHROG	phrog_824	NA	unknown function
UHGV-1478517_34	UniRef90	UniRef90_A0A658JYB5	VRR-NUC domain-containing protein	NA
UHGV-1478517_34	eggNOG-mapper	767434.Fraau_0982	VRR-NUC domain	NA
UHGV-1478517_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1478517_34	Structural annotation	PF08774	NA	NA
UHGV-1478517_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1478517_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1478517_35	UniRef90	UniRef90_A0A3D0MPP5	Replicative DNA helicase	NA
UHGV-1478517_35	eggNOG-mapper	1321786.HMPREF1992_01477	Participates in initiation and elongation during chromosome replication	NA
UHGV-1478517_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1478517_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1478517_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-1478517_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1478517_36	PHROG	phrog_15768	NA	unknown function
UHGV-1478517_36	Pfam	PF19808	NA	DUF6291
UHGV-1478517_36	Structural annotation	PF19808	NA	NA
UHGV-1478517_37	PHROG	phrog_398	NA	unknown function
UHGV-1478517_37	UniRef90	UniRef90_UPI000489F9F0	putative HNHc nuclease	NA
UHGV-1478517_37	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-1478517_37	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1478517_37	Structural annotation	PF16784	NA	NA
UHGV-1478517_38	PHROG	phrog_14970	NA	unknown function
UHGV-1478517_38	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-1478517_38	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-1478517_38	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1478517_38	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1478517_38	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1478517_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1478517_40	UniRef90	UniRef90_UPI000C7CF4DA	siphovirus Gp157 family protein	NA
UHGV-1478517_40	eggNOG-mapper	1121091.AUMP01000003_gene2548	Siphovirus Gp157	NA
UHGV-1478517_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1478517_40	Structural annotation	PF05565	NA	NA
UHGV-1478517_44	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-1478517_44	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1478517_45	Structural annotation	PF20432, MF_00535, NF040507, COG1396	NA	NA
UHGV-1478517_46	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1478517_46	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1478517_46	UniRef90	UniRef90_A0A3M1YWL0	XRE family transcriptional regulator	NA
UHGV-1478517_46	eggNOG-mapper	1121931.AUHG01000003_gene900	NA	NA
UHGV-1478517_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1478517_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1478517_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1478517_47	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1478517_47	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-1478517_50	KOfam	K14059	int; integrase	NA
UHGV-1478517_50	PHROG	phrog_1	integrase	integration and excision
UHGV-1478517_50	UniRef90	UniRef90_UPI001B3C717A	site-specific integrase	NA
UHGV-1478517_50	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-1478517_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1478517_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA