UHGV-1479405

Genome information

Genome length 31,838 bps

CDS count 53

Completeness 99.08% (high-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-1479405
vOTU ID	vOTU-008407
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0221669
BioSample	SAMEA2152443
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.93
Jumbo phage	No

Genome content
Genome length	31,838 bps
GC content	53.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.06%
Average CDS length	561.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1479405_3	PHROG	phrog_24928	NA	unknown function
UHGV-1479405_3	eggNOG-mapper	445972.ANACOL_03348	NA	NA
UHGV-1479405_5	PHROG	phrog_21980	NA	unknown function
UHGV-1479405_5	UniRef90	UniRef90_A0A1Q6L1N6	NA	NA
UHGV-1479405_5	eggNOG-mapper	742733.HMPREF9469_05080	NA	NA
UHGV-1479405_5	Pfam	PF19789	NA	DUF6273
UHGV-1479405_5	Structural annotation	PF19789	NA	NA
UHGV-1479405_9	Structural annotation	PF09228	NA	NA
UHGV-1479405_10	PHROG	phrog_421	NA	unknown function
UHGV-1479405_10	UniRef90	UniRef90_A0A3R7BR33	NA	NA
UHGV-1479405_10	eggNOG-mapper	1235800.C819_00518	NA	NA
UHGV-1479405_12	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1479405_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1479405_12	UniRef90	UniRef90_UPI00164AFBC1	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1479405_12	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1479405_12	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1479405_12	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1479405_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1479405_12	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1479405_15	PHROG	phrog_38056	NA	unknown function
UHGV-1479405_16	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-1479405_16	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1479405_16	UniRef90	UniRef90_A0A1Q6L1M6	HTH_38 domain-containing protein	NA
UHGV-1479405_16	eggNOG-mapper	1203606.HMPREF1526_01866	Helix-turn-helix domain	NA
UHGV-1479405_16	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-1479405_16	Structural annotation	PF04218	NA	NA
UHGV-1479405_17	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-1479405_17	PHROG	phrog_4646	transposase	integration and excision
UHGV-1479405_17	UniRef90	UniRef90_R6T8F3	Integrase catalytic domain-containing protein	NA
UHGV-1479405_17	eggNOG-mapper	397290.C810_00443	NA	NA
UHGV-1479405_17	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-1479405_17	Pfam	PF00665	Integrase core domain	rve
UHGV-1479405_17	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-1479405_17	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-1479405_17	Structural annotation	PF03400, PF13384, NF033563, COG2826	NA	NA
UHGV-1479405_18	UniRef90	UniRef90_R6TP76	RHH_1 domain-containing protein	NA
UHGV-1479405_18	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1479405_18	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-1479405_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1479405_20	UniRef90	UniRef90_A0A1Q6RIN1	Transcriptional regulator	NA
UHGV-1479405_20	eggNOG-mapper	1235797.C816_02851	Helix-turn-helix XRE-family like proteins	NA
UHGV-1479405_20	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1479405_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1479405_20	Structural annotation	PF13560, NF041951, COG1813	NA	NA
UHGV-1479405_21	Structural annotation	PF02318	NA	NA
UHGV-1479405_23	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1479405_23	PHROG	phrog_435	endolysin	lysis
UHGV-1479405_23	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1479405_23	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1479405_23	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1479405_23	Pfam	PF05036	SPOR domain	SPOR
UHGV-1479405_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1479405_23	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1479405_24	PHROG	phrog_443	holin	lysis
UHGV-1479405_24	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-1479405_24	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1479405_24	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1479405_25	PHROG	phrog_1863	NA	unknown function
UHGV-1479405_25	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-1479405_27	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-1479405_27	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-1479405_27	Structural annotation	PF14600	NA	NA
UHGV-1479405_29	PHROG	phrog_29409	NA	unknown function
UHGV-1479405_30	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1479405_30	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1479405_30	UniRef90	UniRef90_UPI001C3EE3AC	RNA-directed DNA polymerase	NA
UHGV-1479405_30	eggNOG-mapper	742722.HMPREF9463_00262	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1479405_30	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1479405_30	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1479405_30	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1479405_30	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1479405_31	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-1479405_32	PHROG	phrog_37900	NA	unknown function
UHGV-1479405_32	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-1479405_32	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-1479405_32	Pfam	PF19789	NA	DUF6273
UHGV-1479405_32	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1479405_32	Structural annotation	PF19789	NA	NA
UHGV-1479405_33	PHROG	phrog_31688	NA	unknown function
UHGV-1479405_33	eggNOG-mapper	189425.PGRAT_19250	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1479405_33	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1479405_33	Structural annotation	PF20745	NA	NA
UHGV-1479405_34	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-1479405_34	UniRef90	UniRef90_A0A1Q6RRT9	Prophage_tail domain-containing protein	NA
UHGV-1479405_34	eggNOG-mapper	1033744.CAEL01000029_gene1269	NA	NA
UHGV-1479405_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1479405_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1479405_34	COG	COG4926	Phage-related protein	NA
UHGV-1479405_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1479405_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1479405_35	UniRef90	UniRef90_UPI001C3EE391	phage tail family protein	NA
UHGV-1479405_35	eggNOG-mapper	1120972.AUMH01000011_gene118	NA	NA
UHGV-1479405_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-1479405_36	PHROG	phrog_240	head protein	head and packaging
UHGV-1479405_36	eggNOG-mapper	1268072.PSAB_20430	NA	NA
UHGV-1479405_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1479405_37	UniRef90	UniRef90_UPI001C3FE757	phage tail family protein	NA
UHGV-1479405_37	eggNOG-mapper	1111134.HMPREF1253_0373	tail component	NA
UHGV-1479405_37	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1479405_37	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1479405_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-1479405_37	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1479405_38	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1479405_38	UniRef90	UniRef90_A0A1U7M2S8	Chromosome partition protein Smc	NA
UHGV-1479405_38	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-1479405_38	COG	COG5283	Phage-related tail protein	NA
UHGV-1479405_38	Structural annotation	PF20155, COG5280	NA	NA
UHGV-1479405_39	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-1479405_40	PHROG	phrog_88	major tail protein	tail
UHGV-1479405_40	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-1479405_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1479405_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1479405_41	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-1479405_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1479405_41	Structural annotation	TIGR01725	NA	NA
UHGV-1479405_42	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-1479405_42	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-1479405_42	Structural annotation	PF05657	NA	NA
UHGV-1479405_43	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1479405_43	UniRef90	UniRef90_UPI001C3E9767	phage head closure protein	NA
UHGV-1479405_43	eggNOG-mapper	358681.BBR47_29190	head-tail adaptor	NA
UHGV-1479405_43	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1479405_43	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1479405_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1479405_44	PHROG	phrog_5223	neck protein	connector
UHGV-1479405_44	UniRef90	UniRef90_UPI001C3EFD15	DNA-packaging protein	NA
UHGV-1479405_44	eggNOG-mapper	1160721.RBI_I01581	NA	NA
UHGV-1479405_44	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1479405_44	Structural annotation	TIGR01560	NA	NA
UHGV-1479405_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-1479405_45	UniRef90	UniRef90_UPI001C3EBC85	phage major capsid protein	NA
UHGV-1479405_45	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-1479405_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1479405_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1479405_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1479405_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1479405_46	KOfam	K06904	NA	NA
UHGV-1479405_46	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1479405_46	UniRef90	UniRef90_UPI001C3EDAFF	HK97 family phage prohead protease	NA
UHGV-1479405_46	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-1479405_46	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1479405_46	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1479405_46	COG	COG3740	Phage head maturation protease	NA
UHGV-1479405_46	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1479405_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-1479405_47	UniRef90	UniRef90_UPI001C3E9371	phage portal protein	NA
UHGV-1479405_47	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-1479405_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1479405_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1479405_47	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1479405_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1479405_48	UniRef90	UniRef90_UPI001C3EDE9F	terminase large subunit	NA
UHGV-1479405_48	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-1479405_48	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1479405_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1479405_48	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1479405_48	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1479405_49	PHROG	phrog_1066	NA	unknown function
UHGV-1479405_49	eggNOG-mapper	290402.Cbei_0905	NA	NA
UHGV-1479405_49	Structural annotation	TIGR01558, COG3747	NA	NA
UHGV-1479405_50	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1479405_50	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1479405_50	UniRef90	UniRef90_A0A1Q6RRQ5	HNHc domain-containing protein	NA
UHGV-1479405_50	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-1479405_50	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1479405_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1479405_51	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1479405_51	UniRef90	UniRef90_UPI0018985E32	NA	NA
UHGV-1479405_51	eggNOG-mapper	484770.UFO1_1680	NA	NA
UHGV-1479405_51	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1479405_52	PHROG	phrog_3301	pyrophosphatase	other
UHGV-1479405_52	eggNOG-mapper	1449050.JNLE01000003_gene3900	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1479405_52	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1479405_52	Structural annotation	COG1694	NA	NA
UHGV-1479405_53	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1479405_53	eggNOG-mapper	1514668.JOOA01000001_gene223	NA	NA
UHGV-1479405_53	Structural annotation	PF21578, NF033538	NA	NA