UHGV-1479407

Genome information

Genome length 17,207 bps

CDS count 23

Completeness 50.59% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-1479407
vOTU ID	vOTU-021121
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0119595
BioSample	SAMEA2338686
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	50.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.07
Jumbo phage	No

Genome content
Genome length	17,207 bps
GC content	44.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	96.56%
Average CDS length	727.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1479407_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1479407_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1479407_3	UniRef90	UniRef90_UPI001304913F	single-stranded DNA-binding protein	NA
UHGV-1479407_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1479407_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1479407_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1479407_4	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1479407_4	UniRef90	UniRef90_A0A843GHP1	DNA-directed DNA polymerase	NA
UHGV-1479407_4	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1479407_4	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-1479407_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-1479407_6	UniRef90	UniRef90_A0A843HN32	Phage DNA encapsidation protein	NA
UHGV-1479407_6	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1479407_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1479407_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1479407_7	PHROG	phrog_4898	holin	lysis
UHGV-1479407_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1479407_9	PHROG	phrog_2742	endolysin	lysis
UHGV-1479407_9	UniRef90	UniRef90_UPI00164BD9D7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1479407_9	eggNOG-mapper	1408437.JNJN01000047_gene708	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1479407_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1479407_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1479407_9	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-1479407_12	PHROG	phrog_11037	NA	unknown function
UHGV-1479407_12	UniRef90	UniRef90_A0A843GNG3	CHAP domain-containing protein	NA
UHGV-1479407_12	eggNOG-mapper	931626.Awo_c23170	CHAP domain	NA
UHGV-1479407_12	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1479407_12	Pfam	PF05257	CHAP domain	CHAP
UHGV-1479407_12	COG	COG3942	Surface antigen	NA
UHGV-1479407_12	Structural annotation	PF18013, PF00877, NF006360, COG3942	NA	NA
UHGV-1479407_13	UniRef90	UniRef90_UPI0004D8DC63	NA	NA
UHGV-1479407_13	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-1479407_13	Structural annotation	PF11195	NA	NA
UHGV-1479407_15	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1479407_15	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-1479407_15	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-1479407_15	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1479407_16	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1479407_16	UniRef90	UniRef90_Q37888	Major capsid protein	NA
UHGV-1479407_16	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-1479407_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-1479407_17	PHROG	phrog_2248	tail protein	tail
UHGV-1479407_17	UniRef90	UniRef90_A0A843HJQ1	Caud_tail_N domain-containing protein	NA
UHGV-1479407_17	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-1479407_17	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1479407_17	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1479407_17	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1479407_18	PHROG	phrog_2038	upper collar connector	connector
UHGV-1479407_18	UniRef90	UniRef90_A6XAD7	Upper collar	NA
UHGV-1479407_18	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-1479407_18	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1479407_18	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1479407_19	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1479407_19	UniRef90	UniRef90_A0A8D6XVH1	Lower collar protein (Virfam: adaptor Ad4)	NA
UHGV-1479407_19	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-1479407_20	PHROG	phrog_1171	tail spike protein	tail
UHGV-1479407_20	eggNOG-mapper	269482.Bcep1808_1185	Pectate lyase superfamily protein	NA
UHGV-1479407_20	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1479407_20	COG	COG5434	Polygalacturonase	NA
UHGV-1479407_20	Structural annotation	PF13884	NA	NA