UHGV-1479699

Genome information

vOTU vOTU-020887

Genome length 29,679 bps

CDS count 33

Completeness 63.88% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-1479699
vOTU ID	vOTU-020887
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0209636
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.3
Jumbo phage	No

Genome content
Genome length	29,679 bps
GC content	49.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	96.11%
Average CDS length	865.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1479699_1	PHROG	phrog_2929	tail fiber protein	tail
UHGV-1479699_1	UniRef90	UniRef90_R6C4A8	Structural component of the tail fiber	NA
UHGV-1479699_2	PHROG	phrog_372	tail protein	tail
UHGV-1479699_2	UniRef90	UniRef90_A0A412AYA6	Fibronectin type-III domain-containing protein	NA
UHGV-1479699_2	eggNOG-mapper	442493.A8E284_BPPHE	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1479699_2	Pfam	PF05895	NA	DUF859
UHGV-1479699_2	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-1479699_3	PHROG	phrog_21233	NA	unknown function
UHGV-1479699_3	UniRef90	UniRef90_A0A316R7T0	Holin	NA
UHGV-1479699_3	eggNOG-mapper	1235802.C823_05262	Bacteriophage holin family	NA
UHGV-1479699_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1479699_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1479699_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1479699_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1479699_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1479699_4	PHROG	phrog_20388	endolysin	lysis
UHGV-1479699_4	UniRef90	UniRef90_A0A354MQL8	LysM domain-containing protein	NA
UHGV-1479699_4	eggNOG-mapper	665950.HMPREF1025_02667	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1479699_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1479699_4	Pfam	PF01476	LysM domain	LysM
UHGV-1479699_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1479699_4	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-1479699_5	PHROG	phrog_2308	NA	unknown function
UHGV-1479699_5	UniRef90	UniRef90_A0A3A9C2N9	RNA polymerase subunit sigma-70	NA
UHGV-1479699_5	eggNOG-mapper	397288.C806_04858	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1479699_5	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-1479699_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1479699_5	Structural annotation	PF06056, COG2771	NA	NA
UHGV-1479699_6	PHROG	phrog_2996	NA	unknown function
UHGV-1479699_6	eggNOG-mapper	397288.C806_04857	NA	NA
UHGV-1479699_6	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-1479699_7	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1479699_7	PHROG	phrog_95	integrase	integration and excision
UHGV-1479699_7	UniRef90	UniRef90_A0A1M6IN54	Site-specific DNA recombinase	NA
UHGV-1479699_7	eggNOG-mapper	1235790.C805_00888	Resolvase, N terminal domain	NA
UHGV-1479699_7	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1479699_7	Pfam	PF07508	Recombinase	Recombinase
UHGV-1479699_7	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1479699_7	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1479699_7	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1479699_8	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1479699_8	PHROG	phrog_95	integrase	integration and excision
UHGV-1479699_8	UniRef90	UniRef90_A0A7U9RZ18	Transposon Tn3 resolvase	NA
UHGV-1479699_8	eggNOG-mapper	397288.C806_04855	resolvase	NA
UHGV-1479699_8	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1479699_8	Pfam	PF07508	Recombinase	Recombinase
UHGV-1479699_8	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1479699_8	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1479699_8	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-1479699_9	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1479699_9	PHROG	phrog_95	integrase	integration and excision
UHGV-1479699_9	UniRef90	UniRef90_A0A0L6ZDW2	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-1479699_9	eggNOG-mapper	742741.HMPREF9475_02354	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1479699_9	AcrCatalog	cluster_9095	NA	NA
UHGV-1479699_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1479699_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1479699_10	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1479699_10	PHROG	phrog_7701	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1479699_10	UniRef90	UniRef90_A0A401LD68	Recombinase domain-containing protein	NA
UHGV-1479699_10	eggNOG-mapper	742741.HMPREF9475_02355	Recombinase	NA
UHGV-1479699_10	Pfam	PF07508	Recombinase	Recombinase
UHGV-1479699_10	Structural annotation	PF07508	NA	NA
UHGV-1479699_11	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1479699_11	PHROG	phrog_95	integrase	integration and excision
UHGV-1479699_11	UniRef90	UniRef90_A0A401LD58	Resolvase	NA
UHGV-1479699_11	eggNOG-mapper	742741.HMPREF9475_02356	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1479699_11	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1479699_11	Pfam	PF07508	Recombinase	Recombinase
UHGV-1479699_11	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1479699_11	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1479699_11	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-1479699_12	PHROG	phrog_2996	NA	unknown function
UHGV-1479699_12	eggNOG-mapper	908340.HMPREF9406_0182	NA	NA
UHGV-1479699_12	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-1479699_13	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1479699_13	PHROG	phrog_1794	amidase	lysis
UHGV-1479699_13	UniRef90	UniRef90_UPI001EDD3222	amidase	NA
UHGV-1479699_13	eggNOG-mapper	908340.HMPREF9406_0181	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1479699_13	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1479699_13	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1479699_13	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-1479699_14	PHROG	phrog_21233	NA	unknown function
UHGV-1479699_14	UniRef90	UniRef90_A0A3N0I3Q6	Holin	NA
UHGV-1479699_14	eggNOG-mapper	908340.HMPREF9406_0179	toxin secretion phage lysis holin	NA
UHGV-1479699_14	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1479699_14	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1479699_14	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1479699_14	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1479699_15	PHROG	phrog_372	tail protein	tail
UHGV-1479699_15	UniRef90	UniRef90_A0A4S2AE74	Pilus assembly protein	NA
UHGV-1479699_15	eggNOG-mapper	908340.HMPREF9406_0178	NA	NA
UHGV-1479699_15	Pfam	PF05895	NA	DUF859
UHGV-1479699_15	COG	COG4675	Phage tail collar domain	NA
UHGV-1479699_15	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1479699_16	PHROG	phrog_18110	NA	unknown function
UHGV-1479699_16	eggNOG-mapper	411468.CLOSCI_00190	NA	NA
UHGV-1479699_17	PHROG	phrog_3267	tail protein	tail
UHGV-1479699_17	eggNOG-mapper	658655.HMPREF0988_00527	candidate retaining b-glycosidase, glycoside hydrolase family 5 protein K01238	NA
UHGV-1479699_17	Structural annotation	PF16407, PF03921, PF03404, PF07354, MF_04116, NF010681, COG3291	NA	NA
UHGV-1479699_18	PHROG	phrog_3558	tail protein	tail
UHGV-1479699_18	UniRef90	UniRef90_A0A4S2ACR5	Ig-like domain-containing protein	NA
UHGV-1479699_18	eggNOG-mapper	552396.HMPREF0863_01446	Phage minor structural protein	NA
UHGV-1479699_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1479699_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1479699_18	COG	COG4926	Phage-related protein	NA
UHGV-1479699_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1479699_19	UniRef90	UniRef90_B0N9T1	Putative phage tail component domain protein	NA
UHGV-1479699_19	eggNOG-mapper	908340.HMPREF9406_0176	NA	NA
UHGV-1479699_19	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-1479699_20	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1479699_20	UniRef90	UniRef90_H1BAU4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1479699_20	eggNOG-mapper	908340.HMPREF9406_0175	tail tape measure protein	NA
UHGV-1479699_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1479699_20	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1479699_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1479699_20	COG	COG5283	Phage-related tail protein	NA
UHGV-1479699_21	PHROG	phrog_15002	NA	unknown function
UHGV-1479699_21	UniRef90	UniRef90_A0A3D6BHK6	Phage tail tape measure protein	NA
UHGV-1479699_21	eggNOG-mapper	1235799.C818_01008	Phage-related minor tail protein	NA
UHGV-1479699_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1479699_21	COG	COG5283	Phage-related tail protein	NA
UHGV-1479699_21	Structural annotation	PF06120	NA	NA
UHGV-1479699_22	PHROG	phrog_3033	NA	unknown function
UHGV-1479699_22	eggNOG-mapper	908340.HMPREF9406_0174	NA	NA
UHGV-1479699_23	PHROG	phrog_709	NA	unknown function
UHGV-1479699_23	eggNOG-mapper	908340.HMPREF9406_0173	NA	NA
UHGV-1479699_23	Structural annotation	PF11836	NA	NA
UHGV-1479699_24	PHROG	phrog_88	major tail protein	tail
UHGV-1479699_24	UniRef90	UniRef90_H1BAU1	Phi13 family phage major tail protein	NA
UHGV-1479699_24	eggNOG-mapper	908340.HMPREF9406_0172	phage major tail protein, phi13 family	NA
UHGV-1479699_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1479699_24	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1479699_25	PHROG	phrog_78	tail terminator	connector
UHGV-1479699_25	eggNOG-mapper	908340.HMPREF9406_0171	NA	NA
UHGV-1479699_25	Structural annotation	PF20765	NA	NA
UHGV-1479699_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1479699_26	UniRef90	UniRef90_A0A1I6KUF7	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1479699_26	eggNOG-mapper	908340.HMPREF9406_0170	NA	NA
UHGV-1479699_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1479699_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1479699_27	PHROG	phrog_25	head closure Hc1	connector
UHGV-1479699_27	UniRef90	UniRef90_H1BAT8	Putative phage head-tail adaptor	NA
UHGV-1479699_27	eggNOG-mapper	742741.HMPREF9475_02372	Phage head-tail joining protein	NA
UHGV-1479699_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1479699_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1479699_27	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1479699_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1479699_28	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1479699_28	UniRef90	UniRef90_A0A2T3FP12	AraC family transcriptional regulator	NA
UHGV-1479699_28	eggNOG-mapper	908340.HMPREF9406_0169	Phage gp6-like head-tail connector protein	NA
UHGV-1479699_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1479699_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1479699_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1479699_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1479699_29	UniRef90	UniRef90_A0A3N0I420	Phage major capsid protein	NA
UHGV-1479699_29	eggNOG-mapper	908340.HMPREF9406_0168	Phage major capsid protein, HK97 family	NA
UHGV-1479699_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1479699_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1479699_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1479699_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1479699_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1479699_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1479699_30	UniRef90	UniRef90_A0A401LD50	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1479699_30	eggNOG-mapper	742741.HMPREF9475_02375	Serine dehydrogenase proteinase	NA
UHGV-1479699_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1479699_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1479699_30	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1479699_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-1479699_31	UniRef90	UniRef90_H1BAT4	HK97 family phage portal protein	NA
UHGV-1479699_31	eggNOG-mapper	908340.HMPREF9406_0166	Phage portal protein, HK97 family	NA
UHGV-1479699_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1479699_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1479699_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1479699_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1479699_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1479699_32	UniRef90	UniRef90_A0A4S2AAI1	Terminase large subunit	NA
UHGV-1479699_32	eggNOG-mapper	908340.HMPREF9406_0163	Terminase	NA
UHGV-1479699_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1479699_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1479699_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1479699_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1479699_33	PHROG	phrog_4709	NA	unknown function
UHGV-1479699_33	UniRef90	UniRef90_UPI001C069D89	MobA/MobL family protein	NA
UHGV-1479699_33	eggNOG-mapper	552396.HMPREF0863_01517	MobA/MobL family	NA
UHGV-1479699_33	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA