UHGV-1479794

Genome information

vOTU vOTU-071956

Genome length 17,355 bps

CDS count 24

Completeness 99.34% (high-quality)

geNomad score 0.9549

Prediction confidence Confident

Genome information
Genome ID	UHGV-1479794
vOTU ID	vOTU-071956
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0121295
BioSample	SAMEA2582072
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9549
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.64
Jumbo phage	No

Genome content
Genome length	17,355 bps
GC content	29.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	93.40%
Average CDS length	678.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1479794_2	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1479794_2	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1479794_2	UniRef90	UniRef90_A0A843GYE4	DNA-directed DNA polymerase (Fragment)	NA
UHGV-1479794_2	eggNOG-mapper	1162305.I3PV37_9CAUD	nucleotide binding	NA
UHGV-1479794_2	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1479794_2	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-1479794_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1479794_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1479794_5	UniRef90	UniRef90_A0A7X9XNJ3	Single-stranded DNA-binding protein	NA
UHGV-1479794_5	eggNOG-mapper	536233.CLO_0510	Single-strand binding protein family	NA
UHGV-1479794_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1479794_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1479794_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1479794_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1479794_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1479794_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-1479794_6	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-1479794_6	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1479794_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1479794_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1479794_7	KOfam	K07273	acm; lysozyme	NA
UHGV-1479794_7	PHROG	phrog_6219	endolysin	lysis
UHGV-1479794_7	UniRef90	UniRef90_A0A1W7LXK5	Glycosyl hydrolase family protein	NA
UHGV-1479794_7	eggNOG-mapper	1294142.CINTURNW_1949	family 25	NA
UHGV-1479794_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1479794_7	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1479794_7	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1479794_7	Structural annotation	PF01471, TIGR02594, NF038080, COG3409	NA	NA
UHGV-1479794_9	PHROG	phrog_199	holin	lysis
UHGV-1479794_9	UniRef90	UniRef90_A0A7X9B7E1	Phage holin family protein	NA
UHGV-1479794_9	eggNOG-mapper	411470.RUMGNA_03117	Bacteriophage holin family	NA
UHGV-1479794_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1479794_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1479794_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1479794_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1479794_10	PHROG	phrog_14030	NA	unknown function
UHGV-1479794_10	UniRef90	UniRef90_A0A174CDT6	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1479794_10	eggNOG-mapper	1195236.CTER_2407	NlpC/P60 family	NA
UHGV-1479794_10	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1479794_10	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1479794_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1479794_10	Structural annotation	PF18013, PF01471, PF05382, NF033742, NF038080, COG3409, COG0791	NA	NA
UHGV-1479794_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1479794_12	UniRef90	UniRef90_A0A1W7M3W8	Putative Major head protein	NA
UHGV-1479794_12	eggNOG-mapper	1128071.G9J3H7_9CAUD	T=13 icosahedral viral capsid	NA
UHGV-1479794_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-1479794_13	PHROG	phrog_2248	tail protein	tail
UHGV-1479794_13	UniRef90	UniRef90_A0A843HQG9	Caud_tail_N domain-containing protein	NA
UHGV-1479794_13	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1479794_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1479794_13	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1479794_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-1479794_14	UniRef90	UniRef90_Q37891	Portal protein	NA
UHGV-1479794_14	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-1479794_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1479794_14	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1479794_15	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1479794_15	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-1479794_17	eggNOG-mapper	632245.CLP_2684	nuclear chromosome segregation	NA
UHGV-1479794_17	COG	COG5301	Phage-related tail fiber protein	NA