UHGV-1480939

Genome information

Genome length 30,018 bps

CDS count 47

Completeness 73.92% (medium-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-1480939
vOTU ID	vOTU-022372
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0211573
BioSample	SAMN06165016
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.6
Jumbo phage	No

Genome content
Genome length	30,018 bps
GC content	53.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	88.92%
Average CDS length	571.60 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1480939_1	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1480939_1	UniRef90	UniRef90_A0A2A7B6K1	TMP_3 domain-containing protein	NA
UHGV-1480939_1	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-1480939_1	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1480939_1	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1480939_1	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1480939_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1480939_2	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1480939_2	eggNOG-mapper	439292.Bsel_2995	tail component	NA
UHGV-1480939_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-1480939_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1480939_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1480939_3	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-1480939_3	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1480939_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1480939_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1480939_3	COG	COG4926	Phage-related protein	NA
UHGV-1480939_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1480939_5	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-1480939_5	PHROG	phrog_7158	NA	unknown function
UHGV-1480939_5	eggNOG-mapper	565653.EGBG_01980	Phage minor structural protein	NA
UHGV-1480939_5	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1480939_5	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-1480939_5	Structural annotation	PF14582, MF_00905, NF008359, COG2129	NA	NA
UHGV-1480939_6	KOfam	K07273	acm; lysozyme	NA
UHGV-1480939_6	PHROG	phrog_291	endolysin	lysis
UHGV-1480939_6	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-1480939_6	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1480939_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1480939_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1480939_6	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1480939_7	PHROG	phrog_1863	NA	unknown function
UHGV-1480939_7	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-1480939_8	PHROG	phrog_263	holin	lysis
UHGV-1480939_8	UniRef90	UniRef90_A0A329UCA4	Phage holin	NA
UHGV-1480939_8	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-1480939_8	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1480939_8	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1480939_8	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1480939_10	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-1480939_12	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-1480939_12	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-1480939_12	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-1480939_13	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-1480939_13	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-1480939_18	PHROG	phrog_16490	NA	unknown function
UHGV-1480939_18	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1480939_19	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-1480939_20	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1480939_21	KOfam	K14059	int; integrase	NA
UHGV-1480939_21	PHROG	phrog_1	integrase	integration and excision
UHGV-1480939_21	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-1480939_21	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-1480939_21	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1480939_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1480939_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1480939_21	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1480939_22	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1480939_22	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-1480939_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1480939_22	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1480939_25	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1480939_25	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1480939_25	UniRef90	UniRef90_A0A1C6JSH3	DNA polymerase III polC-type	NA
UHGV-1480939_25	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-1480939_25	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1480939_25	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1480939_25	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-1480939_25	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1480939_25	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-1480939_26	Structural annotation	PF06776, COG5342	NA	NA
UHGV-1480939_28	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-1480939_28	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-1480939_28	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1480939_29	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-1480939_29	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1480939_36	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1480939_36	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1480939_37	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1480939_37	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1480939_37	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1480939_38	Pfam	PF04448	NA	DUF551
UHGV-1480939_38	Structural annotation	NF041588	NA	NA
UHGV-1480939_39	PHROG	phrog_7566	NA	unknown function
UHGV-1480939_39	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1480939_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1480939_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1480939_40	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-1480939_40	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-1480939_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1480939_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1480939_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1480939_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1480939_40	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1480939_41	PHROG	phrog_6969	NA	unknown function
UHGV-1480939_41	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1480939_41	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1480939_41	Structural annotation	PF04182, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-1480939_42	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1480939_42	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1480939_42	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-1480939_42	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-1480939_42	Pfam	PF13614	AAA domain	AAA_31
UHGV-1480939_42	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1480939_42	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1480939_43	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1480939_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1480939_43	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-1480939_43	eggNOG-mapper	429009.Adeg_0686	helix-turn-helix domain protein	NA
UHGV-1480939_43	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1480939_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1480939_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1480939_43	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-1480939_44	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1480939_44	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1480939_44	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-1480939_44	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-1480939_44	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1480939_44	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1480939_44	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1480939_45	Structural annotation	PF04545	NA	NA
UHGV-1480939_47	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1480939_47	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-1480939_47	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-1480939_47	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1480939_47	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA