UHGV-1482342

Genome information

Genome length 16,765 bps

CDS count 25

Completeness 88.30% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-1482342
vOTU ID	vOTU-017419
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0114456
BioSample	SAMN00791901
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.56
Jumbo phage	No

Genome content
Genome length	16,765 bps
GC content	32.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	90.09%
Average CDS length	605.04 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1482342_4	Structural annotation	MF_01560, NF010187	NA	NA
UHGV-1482342_7	Structural annotation	PF17548	NA	NA
UHGV-1482342_8	Structural annotation	PF17427	NA	NA
UHGV-1482342_10	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1482342_10	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1482342_10	UniRef90	UniRef90_A0A843HHQ3	DNA-directed DNA polymerase	NA
UHGV-1482342_10	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1482342_10	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1482342_10	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1482342_11	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1482342_11	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-1482342_11	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-1482342_11	Structural annotation	PF12643, MF_00374, TIGR03188, COG0140	NA	NA
UHGV-1482342_13	PHROG	phrog_2150	terminase	head and packaging
UHGV-1482342_13	UniRef90	UniRef90_A0A843GUV2	Phage DNA encapsidation protein	NA
UHGV-1482342_13	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1482342_13	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1482342_13	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1482342_15	UniRef90	UniRef90_A0A3B9GPW1	Cpl-7 domain-containing protein	NA
UHGV-1482342_15	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1482342_15	COG	COG1388	LysM repeat	NA
UHGV-1482342_15	Structural annotation	PF08230	NA	NA
UHGV-1482342_16	PHROG	phrog_11037	NA	unknown function
UHGV-1482342_16	eggNOG-mapper	1449050.JNLE01000003_gene2104	Putative peptidoglycan binding domain	NA
UHGV-1482342_16	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1482342_16	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1482342_16	Structural annotation	PF18013	NA	NA
UHGV-1482342_19	PHROG	phrog_236	nucleotide kinase	other
UHGV-1482342_19	UniRef90	UniRef90_A0A8D9PG35	Nucelotide kinase	NA
UHGV-1482342_19	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-1482342_19	Pfam	PF11753	NA	DUF3310
UHGV-1482342_21	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1482342_21	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-1482342_21	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-1482342_21	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1482342_21	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1482342_22	PHROG	phrog_2248	tail protein	tail
UHGV-1482342_22	UniRef90	UniRef90_A0A843HU95	Caud_tail_N domain-containing protein	NA
UHGV-1482342_22	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1482342_22	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1482342_22	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1482342_22	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1482342_23	PHROG	phrog_2038	upper collar connector	connector
UHGV-1482342_23	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-1482342_23	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-1482342_23	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1482342_23	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1482342_24	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1482342_24	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-1482342_25	eggNOG-mapper	1461580.CCAS010000014_gene1779	Pectate lyase superfamily protein	NA
UHGV-1482342_25	COG	COG5434	Polygalacturonase	NA
UHGV-1482342_25	Structural annotation	PF12708, NF007822, COG5434	NA	NA