UHGV-1482433

Genome information

Genome length 38,179 bps

CDS count 56

Completeness 91.19% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1482433
vOTU ID	vOTU-062500
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0258485
BioSample	SAMN06350147
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.5
Jumbo phage	No

Genome content
Genome length	38,179 bps
GC content	58.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.66%
Average CDS length	629.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1482433_2	PHROG	phrog_37329	NA	unknown function
UHGV-1482433_2	eggNOG-mapper	1395587.P364_0113810	Fibronectin type 3 domain	NA
UHGV-1482433_2	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1482433_2	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1482433_2	Structural annotation	PF17744, PF16655, MF_01905, NF038116, COG3979, COG2033	NA	NA
UHGV-1482433_4	PHROG	phrog_156	portal protein	head and packaging
UHGV-1482433_4	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1482433_4	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1482433_5	PHROG	phrog_13908	NA	unknown function
UHGV-1482433_5	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1482433_6	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1482433_6	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-1482433_6	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1482433_6	Pfam	PF13252	NA	DUF4043
UHGV-1482433_6	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1482433_6	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1482433_8	PHROG	phrog_12105	NA	unknown function
UHGV-1482433_8	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1482433_9	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-1482433_9	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1482433_10	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-1482433_10	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1482433_10	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1482433_11	PHROG	phrog_33872	NA	unknown function
UHGV-1482433_11	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-1482433_12	Structural annotation	PF18962, NF011773	NA	NA
UHGV-1482433_13	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1482433_13	PHROG	phrog_819	tail protein	tail
UHGV-1482433_13	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-1482433_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1482433_13	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1482433_14	PHROG	phrog_37900	NA	unknown function
UHGV-1482433_14	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-1482433_14	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-1482433_14	Pfam	PF19789	NA	DUF6273
UHGV-1482433_14	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1482433_14	Structural annotation	PF19789	NA	NA
UHGV-1482433_15	PHROG	phrog_18725	NA	unknown function
UHGV-1482433_15	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-1482433_16	eggNOG-mapper	1232443.BAIA02000106_gene3111	NA	NA
UHGV-1482433_18	PHROG	phrog_6918	holin	lysis
UHGV-1482433_18	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-1482433_18	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1482433_18	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1482433_18	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1482433_19	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-1482433_19	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1482433_19	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1482433_19	Structural annotation	NF033743	NA	NA
UHGV-1482433_22	PHROG	phrog_16490	NA	unknown function
UHGV-1482433_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1482433_24	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1482433_24	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1482433_25	KOfam	K14059	int; integrase	NA
UHGV-1482433_25	PHROG	phrog_1	integrase	integration and excision
UHGV-1482433_25	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-1482433_25	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-1482433_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1482433_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1482433_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1482433_25	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1482433_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1482433_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1482433_26	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-1482433_28	KOfam	K05516	cbpA; curved DNA-binding protein	NA
UHGV-1482433_28	PHROG	phrog_14336	NA	unknown function
UHGV-1482433_28	UniRef90	UniRef90_UPI00193A3DF3	dnaJ homolog subfamily B member 6-A-like	NA
UHGV-1482433_28	eggNOG-mapper	401526.TcarDRAFT_1254	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	NA
UHGV-1482433_28	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-1482433_28	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-1482433_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1482433_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1482433_29	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-1482433_29	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-1482433_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1482433_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1482433_29	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1482433_30	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-1482433_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1482433_30	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1482433_33	Structural annotation	PF10548	NA	NA
UHGV-1482433_34	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-1482433_34	UniRef90	UniRef90_A0A1Y3RFS1	XRE family transcriptional regulator	NA
UHGV-1482433_36	Structural annotation	NF041247	NA	NA
UHGV-1482433_37	Structural annotation	PF05082	NA	NA
UHGV-1482433_41	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1482433_41	UniRef90	UniRef90_A0A1Q6JI14	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1482433_41	eggNOG-mapper	1410628.JNKS01000054_gene544	NA	NA
UHGV-1482433_41	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1482433_41	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1482433_41	Structural annotation	PF01507, MF_01161, NF006327, COG0175	NA	NA
UHGV-1482433_42	PHROG	phrog_3136	NA	unknown function
UHGV-1482433_42	UniRef90	UniRef90_A0A843H9M8	ASCH domain-containing protein	NA
UHGV-1482433_42	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1482433_42	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1482433_43	PHROG	phrog_38832	NA	unknown function
UHGV-1482433_43	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-1482433_44	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1482433_44	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-1482433_44	eggNOG-mapper	1511.CLOST_1546	HNH endonuclease	NA
UHGV-1482433_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1482433_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1482433_44	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1482433_48	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1482433_48	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-1482433_48	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-1482433_48	Pfam	PF06356	NA	DUF1064
UHGV-1482433_48	Structural annotation	PF06356	NA	NA
UHGV-1482433_50	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1482433_50	eggNOG-mapper	1423807.BACO01000037_gene1103	NA	NA
UHGV-1482433_52	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1482433_52	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-1482433_52	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-1482433_52	Structural annotation	PF08271	NA	NA
UHGV-1482433_53	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1482433_53	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-1482433_53	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-1482433_55	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1482433_55	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-1482433_55	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1482433_55	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1482433_55	Structural annotation	PF16677	NA	NA
UHGV-1482433_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1482433_56	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1482433_56	UniRef90	UniRef90_UPI0010311CEE	phage terminase large subunit	NA
UHGV-1482433_56	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1482433_56	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1482433_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-1482433_56	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA